DMR 25124 chr1:22140751-22141350 (600bp)

DMR Stats
Positionchr1:22140751-22141350 (View on UCSC)
Width600bp
Genomic Contextexon
Nearest GenesLDLRAD2 (0bp away)
ANODEV p-value2.25382051771e-05
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25124 LDLRAD2 396 uc001bfg.1 chr1 22138758 22151714 + 600 100.0 1.28 0 0.0 E1 (0), I1 (23.33), E2 (71), I2 (5.83), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25124 chr1 22140821 22141255 wgEncodeRegDnaseClusteredV2 52 score:1000, srow:17476
25124 chr1 22140608 22141277 wgEncodeRegTfbsClusteredV3 RBBP5 score:283, expCount:1, expNums:8, expScores:283, srow:57474
25124 chr1 22140646 22140941 wgEncodeRegTfbsClusteredV3 RCOR1 score:187, expCount:1, expNums:492, expScores:187, srow:57475
25124 chr1 22140657 22140946 wgEncodeRegTfbsClusteredV3 ZNF143 score:326, expCount:1, expNums:361, expScores:326, srow:57476
25124 chr1 22140698 22141751 wgEncodeRegTfbsClusteredV3 POLR2A score:441, expCount:7, expNums:22,146,147,328,332,610,619, expScores:141,412,441,290,321,167,104, srow:57477
25124 chr1 22140801 22141369 wgEncodeRegTfbsClusteredV3 TAF1 score:447, expCount:1, expNums:157, expScores:145, srow:57478
25124 chr1 22140849 22141172 wgEncodeRegTfbsClusteredV3 SP1 score:176, expCount:1, expNums:153, expScores:176, srow:57479
25124 chr1 22140885 22141494 wgEncodeRegTfbsClusteredV3 SP4 score:251, expCount:1, expNums:155, expScores:251, srow:57480
25124 chr1 22140901 22141140 wgEncodeRegTfbsClusteredV3 SPI1 score:361, expCount:1, expNums:126, expScores:361, srow:57481
25124 chr1 22140925 22141200 wgEncodeRegTfbsClusteredV3 ELF1 score:163, expCount:1, expNums:217, expScores:163, srow:57482
25124 chr1 22140940 22141195 wgEncodeRegTfbsClusteredV3 ZBTB33 score:137, expCount:1, expNums:246, expScores:137, srow:57483
25124 chr1 22140951 22141381 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:75, expNums:2,5,20,24,35,37,39,42,44,137,174,213,262,290,463,493,595,597,601,603,604,605,606,607,609,615,621,635,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,681,682,683,684,685,686,687,689, expScores:479,626,467,488,177,210,316,296,333,837,259,444,338,265,177,274,156,235,216,559,787,373,259,378,502,122,254,187,113,468,551,313,620,347,444,261,647,659,933,1000,744,1000,740,732,373,926,601,618,157,1000,751,477,218,130,164,395,307,590,472,445,541,506,554,1000,773,820,422,229,476,365,245,679,787,1000,138, srow:57484
25124 chr1 22140985 22141320 wgEncodeRegTfbsClusteredV3 YY1 score:212, expCount:1, expNums:162, expScores:212, srow:57485
25124 chr1 22140986 22141229 wgEncodeRegTfbsClusteredV3 EGR1 score:158, expCount:1, expNums:216, expScores:158, srow:57486
25124 chr1 22140990 22141333 wgEncodeRegTfbsClusteredV3 GABPA score:215, expCount:1, expNums:140, expScores:215, srow:57487
25124 chr1 22141012 22141255 wgEncodeRegTfbsClusteredV3 JUND score:138, expCount:1, expNums:142, expScores:138, srow:57488
25124 chr1 22141042 22141331 wgEncodeRegTfbsClusteredV3 ZNF143 score:200, expCount:1, expNums:361, expScores:200, srow:57489
25124 chr1 22141051 22141252 wgEncodeRegTfbsClusteredV3 ZBTB7A score:304, expCount:1, expNums:247, expScores:304, srow:57490
25124 chr1 22141053 22141296 wgEncodeRegTfbsClusteredV3 RAD21 score:759, expCount:5, expNums:149,193,231,264,355, expScores:759,261,184,434,296, srow:57491
25124 chr1 22141105 22141428 wgEncodeRegTfbsClusteredV3 BACH1 score:476, expCount:1, expNums:341, expScores:476, srow:57492
25124 chr1 22141145 22141400 wgEncodeRegTfbsClusteredV3 HDAC2 score:270, expCount:1, expNums:141, expScores:270, srow:57493
25124 chr1 22140901 22140920 tfbsConsSites V$P53_01 score:694, zScore:2.04, srow:44931
25124 chr1 22141034 22141049 tfbsConsSites V$ELK1_01 score:854, zScore:1.95, srow:44932
25124 chr1 22141043 22141057 tfbsConsSites V$ISRE_01 score:808, zScore:2.16, srow:44933
25124 chr1 22141157 22141168 tfbsConsSites V$AP2_Q6 score:895, zScore:1.97, srow:44934
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  • 25 of 76 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25124 cellmeth_recounts PrEC: 22, LNCaP: 53, DU145: 10
25124 cellmeth_diffreps_PrECvsLNCaP A=0, B=31, Length=480, Event=Up, log2FC=Inf, padj=4.50368607357446e-09
25124 cellmeth_diffreps_PrECvsLNCaP A=37, B=7, Length=280, Event=Down, log2FC=-2.4, padj=0.000105030392384157
25124 cellmeth_diffreps_PrECvsDU145 A=39, B=2, Length=400, Event=Down, log2FC=-4.29, padj=1.74472441487967e-08
25124 cellmeth_diffreps_LNCaPvsDU145 A=11.76, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.00547907730955432
25124 cellexp id=ENSG00000187942, name=LDLRAD2, PrEC=11, str=34, LNCaP=0, str=1, DU145=66, str=33
25124 tcgameth site:cg13403586, B=0.06, L=0.35, H=0.32
25124 tcgameth site:cg15467646, B=0.06, L=0.47, H=0.43
25124 tcgameth site:cg17456100, B=0.04, L=0.28, H=0.26
25124 tcgameth site:cg24334174, B=0.87, L=0.92, H=0.91
25124 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25124 tcgaexp gene=LDLRAD2, entrez=401944, pos=chr1:22138758-22151714(+), B=490, L=915, M=505, H=384
25124 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305