DMR 25139 chr1:24648301-24649450 (1150bp)

DMR Stats
Positionchr1:24648301-24649450 (View on UCSC)
Width1150bp
Genomic Contextpromoter
Nearest GenesGRHL3 (0bp away)
ANODEV p-value7.25322277061e-08
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25139 GRHL3 446 uc001bix.3 chr1 24645812 24681808 + 1150 100.0 0.48 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) 0.0
25139 GRHL3 446 uc021oiw.1 chr1 24645812 24690970 + 1150 100.0 0.29 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) 0.0
25139 GRHL3 446 uc021oix.1 chr1 24646056 24681808 + 1150 100.0 0.39 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25139 chr1 24648106 24648535 wgEncodeRegDnaseClusteredV2 71 score:1000, srow:19771
25139 chr1 24648646 24649595 wgEncodeRegDnaseClusteredV2 104 score:1000, srow:19772
25139 chr1 24648030 24649198 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:10, expNums:41,163,256,332,340,366,402,563,564,577, expScores:157,228,228,270,333,117,274,1000,690,441, srow:66127
25139 chr1 24648058 24648640 wgEncodeRegTfbsClusteredV3 TCF7L2 score:1000, expCount:5, expNums:363,367,413,414,581, expScores:1000,1000,187,492,350, srow:66128
25139 chr1 24648111 24648890 wgEncodeRegTfbsClusteredV3 TFAP2A score:209, expCount:1, expNums:369, expScores:144, srow:66129
25139 chr1 24648118 24648633 wgEncodeRegTfbsClusteredV3 TFAP2C score:283, expCount:1, expNums:370, expScores:283, srow:66130
25139 chr1 24648142 24648617 wgEncodeRegTfbsClusteredV3 ELK4 score:148, expCount:1, expNums:388, expScores:148, srow:66131
25139 chr1 24648155 24649744 wgEncodeRegTfbsClusteredV3 EZH2 score:683, expCount:5, expNums:1,6,21,38,43, expScores:432,269,635,304,259, srow:66132
25139 chr1 24648165 24648468 wgEncodeRegTfbsClusteredV3 TCF3 score:180, expCount:1, expNums:117, expScores:180, srow:66133
25139 chr1 24648190 24648449 wgEncodeRegTfbsClusteredV3 TCF12 score:224, expCount:1, expNums:116, expScores:224, srow:66134
25139 chr1 24648192 24648467 wgEncodeRegTfbsClusteredV3 MAX score:246, expCount:1, expNums:576, expScores:246, srow:66135
25139 chr1 24648205 24648514 wgEncodeRegTfbsClusteredV3 PAX5 score:157, expCount:1, expNums:101, expScores:157, srow:66136
25139 chr1 24648235 24648540 wgEncodeRegTfbsClusteredV3 RUNX3 score:629, expCount:1, expNums:109, expScores:629, srow:66137
25139 chr1 24648253 24648542 wgEncodeRegTfbsClusteredV3 ZNF143 score:426, expCount:1, expNums:322, expScores:426, srow:66138
25139 chr1 24648256 24648453 wgEncodeRegTfbsClusteredV3 EBF1 score:582, expCount:1, expNums:86, expScores:582, srow:66139
25139 chr1 24648288 24648667 wgEncodeRegTfbsClusteredV3 CHD2 score:205, expCount:1, expNums:288, expScores:205, srow:66140
25139 chr1 24648293 24648656 wgEncodeRegTfbsClusteredV3 ELF1 score:309, expCount:2, expNums:88,217, expScores:173,309, srow:66141
25139 chr1 24648304 24648739 wgEncodeRegTfbsClusteredV3 MAZ score:200, expCount:1, expNums:297, expScores:200, srow:66142
25139 chr1 24648374 24648497 wgEncodeRegTfbsClusteredV3 GABPA score:275, expCount:1, expNums:220, expScores:275, srow:66143
25139 chr1 24648394 24649446 wgEncodeRegTfbsClusteredV3 KAP1 score:447, expCount:2, expNums:365,588, expScores:447,377, srow:66144
25139 chr1 24648444 24649312 wgEncodeRegTfbsClusteredV3 RBBP5 score:274, expCount:1, expNums:8, expScores:205, srow:66145
25139 chr1 24648449 24648817 wgEncodeRegTfbsClusteredV3 PHF8 score:590, expCount:1, expNums:30, expScores:590, srow:66146
25139 chr1 24648450 24649025 wgEncodeRegTfbsClusteredV3 KDM5B score:222, expCount:1, expNums:31, expScores:222, srow:66147
25139 chr1 24648476 24649071 wgEncodeRegTfbsClusteredV3 ZNF263 score:361, expCount:1, expNums:368, expScores:361, srow:66148
25139 chr1 24648507 24648882 wgEncodeRegTfbsClusteredV3 ZKSCAN1 score:443, expCount:1, expNums:418, expScores:443, srow:66149
  • Page 1 of 3
  • 25 of 74 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25139 cellmeth_recounts PrEC: 9, LNCaP: 62, DU145: 0
25139 cellmeth_diffreps_PrECvsLNCaP A=0, B=18, Length=380, Event=Up, log2FC=Inf, padj=3.04238490738774e-05
25139 cellmeth_diffreps_PrECvsDU145 A=11, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00313959514768542
25139 cellmeth_diffreps_LNCaPvsDU145 A=19.24, B=0, Length=340, Event=Down, log2FC=-Inf, padj=5.38176525022975e-05
25139 cellmeth_diffreps_LNCaPvsDU145 A=19.24, B=0, Length=380, Event=Down, log2FC=-Inf, padj=5.38176525022975e-05
25139 cellexp id=ENSG00000158055, name=GRHL3, PrEC=747, str=871, LNCaP=53, str=110, DU145=29, str=102
25139 cellexp id=ENSG00000232298, name=RP11-10N16.3, PrEC=3, str=7, LNCaP=0, str=0, DU145=3, str=2
25139 tcgameth site:cg05036846, B=0.18, L=0.54, H=0.51
25139 tcgameth site:cg11709405, B=0.33, L=0.69, H=0.66
25139 tcgameth site:cg14616251, B=0.2, L=0.63, H=0.6
25139 tcgameth site:cg21273275, B=0.64, L=0.86, H=0.83
25139 tcgaexp gene=GRHL3, entrez=57822, pos=chr1:24645812-24690970(+), B=291, L=109, M=151, H=135
25139 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305