DMR 25145 chr1:25227051-25227200 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:25227051-25227200 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | RUNX3 (0bp away) |
| ANODEV p-value | 0.00240091118056 |
| Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25145 | RUNX3 | 454 | uc001bjq.3 | chr1 | 25226002 | 25256770 | - | 150 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) | 0.0 |
| 25145 | RUNX3 | 454 | uc001bjr.3 | chr1 | 25226002 | 25291501 | - | 150 | 100.0 | 0.29 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) | 0.0 |
| 25145 | RUNX3 | 454 | uc009vrj.3 | chr1 | 25226002 | 25291475 | - | 150 | 100.0 | 0.38 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 0.0 |
| 25145 | RUNX3 | 454 | uc010oen.2 | chr1 | 25226002 | 25256770 | - | 150 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (100) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25145 | chr1 | 25227061 | 25227095 | wgEncodeRegDnaseClusteredV2 | 2 | score:278, srow:20231 |
| 25145 | chr1 | 25227101 | 25227375 | wgEncodeRegDnaseClusteredV2 | 14 | score:350, srow:20232 |
| 25145 | chr1 | 25224152 | 25233709 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:995, expCount:20, expNums:104,105,123,124,130,131,256,306,307,308,326,328,330,332,334,336,338,340,524,602, expScores:731,387,250,412,387,283,174,689,210,231,384,174,165,522,177,432,182,249,180,139, srow:67976 |
| 25145 | chr1 | 25225361 | 25227414 | wgEncodeRegTfbsClusteredV3 | MTA3 | score:504, expCount:1, expNums:95, expScores:404, srow:67994 |
| 25145 | chr1 | 25225436 | 25227406 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:536, expCount:1, expNums:96, expScores:359, srow:67995 |
| 25145 | chr1 | 25225926 | 25227335 | wgEncodeRegTfbsClusteredV3 | PML | score:425, expCount:1, expNums:103, expScores:363, srow:67997 |
| 25145 | chr1 | 25226819 | 25227218 | wgEncodeRegTfbsClusteredV3 | WRNIP1 | score:130, expCount:1, expNums:320, expScores:130, srow:68011 |
| 25145 | chr1 | 25226900 | 25227263 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:238, expCount:1, expNums:88, expScores:238, srow:68012 |
| 25145 | chr1 | 25226975 | 25227278 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:143, expCount:1, expNums:117, expScores:143, srow:68013 |
| 25145 | chr1 | 25227052 | 25227361 | wgEncodeRegTfbsClusteredV3 | POU2F2 | score:211, expCount:1, expNums:125, expScores:211, srow:68014 |
| 25145 | chr1 | 25227076 | 25227391 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:156, expCount:1, expNums:292, expScores:156, srow:68015 |
| 25145 | chr1 | 25226497 | 25228496 | cpgShore | — | values(x.gr)[overs$srow, ]:1178 |
- 12 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25145 | cellmeth_recounts | PrEC: 20, LNCaP: 1, DU145: 0 |  |
| 25145 | cellmeth_diffreps_PrECvsLNCaP | A=31, B=1, Length=400, Event=Down, log2FC=-4.95, padj=1.80595080898607e-07 |  |
| 25145 | cellmeth_diffreps_PrECvsDU145 | A=31, B=0, Length=420, Event=Down, log2FC=-Inf, padj=6.13838086470065e-09 |  |
| 25145 | cellexp | id=ENSG00000020633, name=RUNX3, PrEC=325, str=37, LNCaP=13, str=4, DU145=1814, str=1653 |  |
| 25145 | tcgaexp | gene=RUNX3, entrez=864, pos=chr1:25226002-25291612(-), B=382, L=368, M=346, H=404 |  |
| 25145 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |