DMR 25163 chr1:26551401-26552250 (850bp)

DMR Stats
Positionchr1:26551401-26552250 (View on UCSC)
Width850bp
Genomic Contextpromoter
Nearest GenesBC030768 (0bp away)
ANODEV p-value0.000132729666866
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25163 BC030768 479 uc001blq.3 chr1 26551811 26556331 + 440 51.76 0.36 1 100.0 E1 (45.18), I1 (6.71), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25163 chr1 26551546 26552255 wgEncodeRegDnaseClusteredV2 73 score:1000, srow:21510
25163 chr1 26551514 26551849 wgEncodeRegTfbsClusteredV3 ESR1 score:420, expCount:2, expNums:74,75, expScores:420,206, srow:73025
25163 chr1 26551518 26551861 wgEncodeRegTfbsClusteredV3 NR2C2 score:244, expCount:1, expNums:454, expScores:244, srow:73026
25163 chr1 26551526 26551815 wgEncodeRegTfbsClusteredV3 HNF4G score:200, expCount:1, expNums:183, expScores:200, srow:73027
25163 chr1 26551554 26551849 wgEncodeRegTfbsClusteredV3 BHLHE40 score:568, expCount:1, expNums:423, expScores:568, srow:73028
25163 chr1 26551576 26551915 wgEncodeRegTfbsClusteredV3 RFX5 score:285, expCount:1, expNums:449, expScores:285, srow:73029
25163 chr1 26551584 26551919 wgEncodeRegTfbsClusteredV3 MAX score:209, expCount:1, expNums:439, expScores:209, srow:73030
25163 chr1 26551600 26552444 wgEncodeRegTfbsClusteredV3 POLR2A score:881, expCount:7, expNums:78,147,191,192,445,446,616, expScores:459,266,583,558,263,363,596, srow:73031
25163 chr1 26551602 26551785 wgEncodeRegTfbsClusteredV3 SRF score:155, expCount:1, expNums:198, expScores:155, srow:73032
25163 chr1 26551655 26552438 wgEncodeRegTfbsClusteredV3 EZH2 score:256, expCount:1, expNums:36, expScores:256, srow:73033
25163 chr1 26551671 26552014 wgEncodeRegTfbsClusteredV3 GABPA score:191, expCount:1, expNums:140, expScores:191, srow:73034
25163 chr1 26551676 26551925 wgEncodeRegTfbsClusteredV3 NRF1 score:118, expCount:1, expNums:354, expScores:118, srow:73035
25163 chr1 26551684 26552083 wgEncodeRegTfbsClusteredV3 MXI1 score:373, expCount:1, expNums:441, expScores:373, srow:73036
25163 chr1 26551727 26552002 wgEncodeRegTfbsClusteredV3 ELF1 score:285, expCount:1, expNums:175, expScores:285, srow:73037
25163 chr1 26551754 26551909 wgEncodeRegTfbsClusteredV3 TAF1 score:400, expCount:1, expNums:199, expScores:400, srow:73038
25163 chr1 26551817 26552272 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:198, expCount:1, expNums:195, expScores:198, srow:73039
25163 chr1 26551872 26552279 wgEncodeRegTfbsClusteredV3 TBP score:268, expCount:2, expNums:359,452, expScores:232,268, srow:73040
25163 chr1 26551898 26552193 wgEncodeRegTfbsClusteredV3 HNF4A score:259, expCount:2, expNums:182,432, expScores:259,177, srow:73041
25163 chr1 26551906 26552125 wgEncodeRegTfbsClusteredV3 ZBTB7A score:145, expCount:1, expNums:205, expScores:145, srow:73042
25163 chr1 26551907 26552296 wgEncodeRegTfbsClusteredV3 MAZ score:164, expCount:1, expNums:440, expScores:164, srow:73043
25163 chr1 26551923 26552212 wgEncodeRegTfbsClusteredV3 HNF4G score:164, expCount:1, expNums:183, expScores:164, srow:73044
25163 chr1 26551925 26552200 wgEncodeRegTfbsClusteredV3 CEBPD score:127, expCount:1, expNums:173, expScores:127, srow:73045
25163 chr1 26551990 26552189 wgEncodeRegTfbsClusteredV3 TAF1 score:316, expCount:1, expNums:199, expScores:316, srow:73046
25163 chr1 26551644 26551666 tfbsConsSites V$PPARG_02 score:703, zScore:2.06, srow:55882
25163 chr1 26551698 26551718 tfbsConsSites V$PAX6_01 score:800, zScore:2.62, srow:55883
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  • 25 of 40 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25163 cellmeth_recounts PrEC: 22, LNCaP: 10, DU145: 35
25163 cellmeth_diffreps_PrECvsLNCaP A=30, B=2, Length=380, Event=Down, log2FC=-3.91, padj=3.52787813930666e-06
25163 cellexp id=ENSG00000236155, name=RP11-231P20.2, PrEC=6, str=0, LNCaP=1, str=0, DU145=1, str=2
25163 tcgameth site:cg00478361, B=0.14, L=0.41, H=0.38
25163 tcgameth site:cg04145287, B=0.14, L=0.41, H=0.36
25163 tcgameth site:cg19516105, B=0.4, L=0.66, H=0.65
25163 tcgameth site:cg22374940, B=0.39, L=0.64, H=0.61
25163 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305