DMR 25171 chr1:27844351-27844600 (250bp)

DMR Stats
Positionchr1:27844351-27844600 (View on UCSC)
Width250bp
Genomic Contextintergenic
Nearest GenesAHDC1 (16155bp away)
ANODEV p-value2.82910645528e-09
FrequenciesBenign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25171 chr1 27844566 27844930 wgEncodeRegDnaseClusteredV2 14 score:682, srow:22550
25171 chr1 27844302 27844677 wgEncodeRegTfbsClusteredV3 TBP score:159, expCount:1, expNums:545, expScores:159, srow:79997
25171 chr1 27844490 27844714 wgEncodeRegTfbsClusteredV3 MAX score:476, expCount:1, expNums:223, expScores:476, srow:79998
25171 chr1 27844559 27844843 wgEncodeRegTfbsClusteredV3 ELF1 score:359, expCount:2, expNums:175,217, expScores:359,295, srow:79999
25171 chr1 27844559 27844982 wgEncodeRegTfbsClusteredV3 MYC score:125, expCount:1, expNums:488, expScores:125, srow:80000
25171 chr1 27844588 27844603 tfbsConsSites V$ELK1_01 score:857, zScore:2, srow:60482
25171 chr1 27844591 27844600 tfbsConsSites V$CETS1P54_01 score:937, zScore:1.69, srow:60483
25171 chr1 27844514 27844524 phastConsElements100way lod=16 score:268, srow:114185
  • 8 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25171 cellmeth_recounts PrEC: 25, LNCaP: 20, DU145: 13
25171 cellmeth_diffreps_PrECvsLNCaP A=33, B=6, Length=240, Event=Down, log2FC=-2.46, padj=0.000250325341184513
25171 cellmeth_diffreps_PrECvsDU145 A=37, B=7, Length=340, Event=Down, log2FC=-2.4, padj=0.000130739216319805
25171 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305