DMR 25184 chr1:29449401-29449650 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:29449401-29449650 (View on UCSC) |
| Width | 250bp |
| Genomic Context | promoter |
| Nearest Genes | TMEM200B (0bp away) |
| ANODEV p-value | 0.0148405249072 |
| Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25184 | TMEM200B | 548 | uc001brn.2 | chr1 | 29445937 | 29450421 | - | 250 | 100.0 | 0.21 | 0 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25184 | chr1 | 29448081 | 29451530 | wgEncodeRegDnaseClusteredV2 | 122 | score:1000, srow:23641 |
| 25184 | chr1 | 29448497 | 29449659 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:332, expCount:5, expNums:147,163,275,465,637, expScores:332,263,305,268,155, srow:86613 |
| 25184 | chr1 | 29449138 | 29449461 | wgEncodeRegTfbsClusteredV3 | REST | score:165, expCount:1, expNums:274, expScores:165, srow:86616 |
| 25184 | chr1 | 29449141 | 29450156 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:395, expCount:2, expNums:6,40, expScores:395,318, srow:86617 |
| 25184 | chr1 | 29449478 | 29449479 | phastConsElements100way | lod=13 | score:247, srow:122545 |
| 25184 | chr1 | 29449517 | 29449522 | phastConsElements100way | lod=17 | score:274, srow:122546 |
| 25184 | chr1 | 29447700 | 29451847 | cpgIsland | CpG: 394 | length:4148, cpgNum:394, gcNum:2833, perCpg:19, perGc:68.3, obsExp:0.82, srow:766 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25184 | cellmeth_recounts | PrEC: 70, LNCaP: 1276, DU145: 4 |  |
| 25184 | cellmeth_diffreps_PrECvsLNCaP | A=315, B=4413, Length=3200, Event=Up, log2FC=3.81, padj=0 |  |
| 25184 | cellmeth_diffreps_PrECvsDU145 | A=130, B=4, Length=720, Event=Down, log2FC=-5.02, padj=0 |  |
| 25184 | cellmeth_diffreps_LNCaPvsDU145 | A=4725.18, B=39.29, Length=3360, Event=Down, log2FC=-6.91, padj=0 |  |
| 25184 | cellexp | id=ENSG00000253304, name=TMEM200B, PrEC=136, str=9, LNCaP=7, str=1, DU145=457, str=320 |  |
| 25184 | tcgameth | site:cg07556059, B=0.36, L=0.49, H=0.48 |  |
| 25184 | tcgaexp | gene=TMEM200B, entrez=399474, pos=chr1:29445937-29450421(-), B=1533, L=964, M=563, H=522 |  |
| 25184 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |