DMR 25197 chr1:32237451-32238750 (1300bp)

DMR Stats
Positionchr1:32237451-32238750 (View on UCSC)
Width1300bp
Genomic Contextintergenic
Nearest GenesBAI2 (7802bp away)
ANODEV p-value1.94397069021e-07
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25197 chr1 32237486 32238575 wgEncodeRegDnaseClusteredV2 64 score:1000, srow:26138
25197 chr1 32237308 32238945 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:6, expNums:6,21,36,38,40,43, expScores:294,459,400,194,227,292, srow:92644
25197 chr1 32237393 32238580 wgEncodeRegTfbsClusteredV3 SUZ12 score:287, expCount:2, expNums:358,578, expScores:174,122, srow:92645
25197 chr1 32237712 32238132 wgEncodeRegTfbsClusteredV3 CTCF score:310, expCount:29, expNums:37,39,42,597,603,609,635,636,639,640,641,642,643,644,646,648,659,661,662,664,668,669,672,673,674,676,682,684,686, expScores:142,143,140,310,188,111,183,115,165,188,121,199,226,153,239,115,217,216,201,198,103,114,104,246,170,145,135,86,225, srow:92646
25197 chr1 32237458 32237470 tfbsConsSites V$RORA1_01 score:945, zScore:2.97, srow:68859
25197 chr1 32237528 32237539 tfbsConsSites V$PAX4_03 score:922, zScore:1.94, srow:68860
25197 chr1 32237528 32237540 tfbsConsSites V$MAZR_01 score:855, zScore:1.66, srow:68861
25197 chr1 32238587 32238601 tfbsConsSites V$CDPCR3_01 score:810, zScore:2.16, srow:68862
25197 chr1 32238695 32238712 tfbsConsSites V$CEBP_C score:882, zScore:3.31, srow:68863
25197 chr1 32238696 32238711 tfbsConsSites V$BRN2_01 score:797, zScore:1.64, srow:68864
25197 chr1 32237460 32237468 phastConsElements100way lod=30 score:330, srow:130895
25197 chr1 32237572 32237600 phastConsElements100way lod=92 score:441, srow:130896
25197 chr1 32237698 32237713 phastConsElements100way lod=56 score:392, srow:130897
25197 chr1 32237749 32237755 phastConsElements100way lod=17 score:274, srow:130898
25197 chr1 32237766 32237769 phastConsElements100way lod=17 score:274, srow:130899
25197 chr1 32237787 32237788 phastConsElements100way lod=13 score:247, srow:130900
25197 chr1 32237794 32237804 phastConsElements100way lod=15 score:262, srow:130901
25197 chr1 32237856 32237858 phastConsElements100way lod=13 score:247, srow:130902
25197 chr1 32238082 32238084 phastConsElements100way lod=14 score:255, srow:130903
25197 chr1 32238591 32238593 phastConsElements100way lod=19 score:285, srow:130904
25197 chr1 32238600 32238606 phastConsElements100way lod=36 score:348, srow:130905
25197 chr1 32238616 32238624 phastConsElements100way lod=40 score:359, srow:130906
25197 chr1 32238682 32238694 phastConsElements100way lod=30 score:330, srow:130907
25197 chr1 32237828 32238661 cpgIsland CpG: 75 length:834, cpgNum:75, gcNum:562, perCpg:18, perGc:67.4, obsExp:0.8, srow:798
25197 chr1 32235828 32237827 cpgShore — values(x.gr)[overs$srow, ]:1427
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Omics Overlaps

Dmrid Omic Set Data Plot
25197 cellmeth_recounts PrEC: 90, LNCaP: 3167, DU145: 69
25197 cellmeth_diffreps_PrECvsLNCaP A=138, B=2533, Length=1600, Event=Up, log2FC=4.2, padj=0
25197 cellmeth_diffreps_PrECvsDU145 A=78, B=17, Length=420, Event=Down, log2FC=-2.2, padj=8.01881208939618e-09
25197 cellmeth_diffreps_PrECvsDU145 A=1, B=17, Length=220, Event=Up, log2FC=4.09, padj=0.00138789698671783
25197 cellmeth_diffreps_PrECvsDU145 A=46, B=8, Length=380, Event=Down, log2FC=-2.52, padj=4.31202780970296e-06
25197 cellmeth_diffreps_LNCaPvsDU145 A=2707.89, B=55.19, Length=1600, Event=Down, log2FC=-5.62, padj=0
25197 tcgameth site:cg03774520, B=0.23, L=0.51, H=0.51
25197 tcgameth site:cg04878000, B=0.41, L=0.68, H=0.67
25197 tcgameth site:cg08160462, B=0.72, L=0.79, H=0.78
25197 tcgameth site:cg10505580, B=0.43, L=0.66, H=0.65
25197 tcgameth site:cg11980897, B=0.76, L=0.78, H=0.79
25197 tcgameth site:cg15694605, B=0.19, L=0.41, H=0.43
25197 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305