DMR 25199 chr1:32409801-32410800 (1000bp)

DMR Stats
Positionchr1:32409801-32410800 (View on UCSC)
Width1000bp
Genomic Contextintergenic
Nearest GenesPTP4A2 (5812bp away)
ANODEV p-value4.11807130212e-07
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25199 chr1 32409901 32410315 wgEncodeRegDnaseClusteredV2 104 score:1000, srow:26291
25199 chr1 32410386 32410695 wgEncodeRegDnaseClusteredV2 105 score:1000, srow:26292
25199 chr1 32409262 32409851 wgEncodeRegTfbsClusteredV3 IKZF1 score:510, expCount:1, expNums:294, expScores:510, srow:93652
25199 chr1 32409401 32409916 wgEncodeRegTfbsClusteredV3 CEBPB score:236, expCount:1, expNums:85, expScores:236, srow:93656
25199 chr1 32409642 32410795 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:53, expNums:22,32,61,62,104,105,123,124,130,131,146,147,163,168,206,207,228,229,249,256,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,465,520,521,522,523,524,525,526,577,583,585,596,602,610,613,622,637, expScores:128,410,796,509,892,1000,909,1000,592,1000,931,1000,548,944,237,542,715,1000,191,263,440,1000,857,579,1000,1000,1000,1000,1000,1000,1000,1000,227,202,551,678,235,641,587,702,785,238,949,434,229,734,788,257,639,489,519,1000,134, srow:93657
25199 chr1 32409666 32410763 wgEncodeRegTfbsClusteredV3 KAP1 score:671, expCount:2, expNums:365,588, expScores:334,353, srow:93658
25199 chr1 32409685 32410053 wgEncodeRegTfbsClusteredV3 PHF8 score:753, expCount:1, expNums:30, expScores:753, srow:93659
25199 chr1 32409760 32410359 wgEncodeRegTfbsClusteredV3 CTBP2 score:133, expCount:1, expNums:348, expScores:133, srow:93660
25199 chr1 32409761 32410196 wgEncodeRegTfbsClusteredV3 CHD1 score:156, expCount:1, expNums:287, expScores:156, srow:93661
25199 chr1 32409773 32410057 wgEncodeRegTfbsClusteredV3 KDM5B score:614, expCount:1, expNums:31, expScores:614, srow:93662
25199 chr1 32409784 32410444 wgEncodeRegTfbsClusteredV3 GTF2F1 score:317, expCount:3, expNums:349,389,500, expScores:246,192,242, srow:93663
25199 chr1 32409785 32410442 wgEncodeRegTfbsClusteredV3 JUND score:713, expCount:3, expNums:142,507,594, expScores:259,713,254, srow:93664
25199 chr1 32409799 32410473 wgEncodeRegTfbsClusteredV3 TAF1 score:1000, expCount:7, expNums:115,127,132,157,169,238,254, expScores:701,521,291,1000,333,661,170, srow:93665
25199 chr1 32409799 32410421 wgEncodeRegTfbsClusteredV3 TCF7L2 score:314, expCount:3, expNums:363,414,581, expScores:165,314,179, srow:93666
25199 chr1 32409821 32410363 wgEncodeRegTfbsClusteredV3 ELF1 score:1000, expCount:3, expNums:50,88,217, expScores:308,940,1000, srow:93667
25199 chr1 32409824 32410409 wgEncodeRegTfbsClusteredV3 TBP score:906, expCount:4, expNums:317,359,412,545, expScores:166,616,374,511, srow:93668
25199 chr1 32409846 32410289 wgEncodeRegTfbsClusteredV3 GATA2 score:496, expCount:3, expNums:221,459,498, expScores:263,496,124, srow:93669
25199 chr1 32409856 32410322 wgEncodeRegTfbsClusteredV3 NR3C1 score:482, expCount:2, expNums:56,58, expScores:279,482, srow:93670
25199 chr1 32409859 32410188 wgEncodeRegTfbsClusteredV3 IRF4 score:164, expCount:1, expNums:92, expScores:164, srow:93671
25199 chr1 32409865 32410340 wgEncodeRegTfbsClusteredV3 ELK4 score:351, expCount:1, expNums:388, expScores:351, srow:93672
25199 chr1 32409872 32410405 wgEncodeRegTfbsClusteredV3 BCLAF1 score:229, expCount:2, expNums:84,210, expScores:229,212, srow:93673
25199 chr1 32409877 32410753 wgEncodeRegTfbsClusteredV3 MAX score:973, expCount:6, expNums:223,278,296,395,460,511, expScores:330,353,262,166,204,349, srow:93674
25199 chr1 32409888 32410247 wgEncodeRegTfbsClusteredV3 ARID3A score:173, expCount:1, expNums:467, expScores:173, srow:93675
25199 chr1 32409889 32410238 wgEncodeRegTfbsClusteredV3 STAT5A score:280, expCount:1, expNums:237, expScores:280, srow:93676
25199 chr1 32409891 32410366 wgEncodeRegTfbsClusteredV3 STAT1 score:428, expCount:2, expNums:410,539, expScores:428,128, srow:93677
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  • 25 of 115 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25199 cellmeth_recounts PrEC: 33, LNCaP: 271, DU145: 4
25199 cellmeth_diffreps_PrECvsLNCaP A=29, B=205, Length=1000, Event=Up, log2FC=2.82, padj=0
25199 cellmeth_diffreps_PrECvsDU145 A=30, B=0, Length=400, Event=Down, log2FC=-Inf, padj=1.21014621758047e-08
25199 cellmeth_diffreps_PrECvsDU145 A=14, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000506195974236337
25199 cellmeth_diffreps_PrECvsDU145 A=28, B=5, Length=200, Event=Down, log2FC=-2.49, padj=0.00112599535425937
25199 cellmeth_diffreps_LNCaPvsDU145 A=244.81, B=7.48, Length=1280, Event=Down, log2FC=-5.03, padj=0
25199 cellexp id=ENSG00000184007, name=PTP4A2, PrEC=10620, str=6229, LNCaP=6667, str=7060, DU145=21329, str=22046
25199 tcgameth site:cg00925616, B=0.32, L=0.65, H=0.64
25199 tcgameth site:cg04881103, B=0.23, L=0.53, H=0.48
25199 tcgameth site:cg11756095, B=0.25, L=0.63, H=0.6
25199 tcgameth site:cg17942618, B=0.7, L=0.74, H=0.73
25199 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305