DMR 25204 chr1:32829351-32829500 (150bp)

DMR Stats
Positionchr1:32829351-32829500 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesTSSK3 (0bp away)
ANODEV p-value0.0199178821258
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25204 TSSK3 593 uc001bvf.3 chr1 32827862 32829924 + 150 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25204 chr1 32829346 32830035 wgEncodeRegDnaseClusteredV2 22 score:423, srow:26644
25204 chr1 32829000 32829895 wgEncodeRegTfbsClusteredV3 POLR2A score:530, expCount:1, expNums:229, expScores:530, srow:95796
25204 chr1 32829361 32829381 tfbsConsSites V$STAT1_01 score:769, zScore:1.89, srow:69936
25204 chr1 32829370 32829387 tfbsConsSites V$NF1_Q6 score:867, zScore:1.65, srow:69937
25204 chr1 32829372 32829391 tfbsConsSites V$PPARA_01 score:752, zScore:2, srow:69938
25204 chr1 32829390 32829399 tfbsConsSites V$NRF2_01 score:901, zScore:1.89, srow:69939
25204 chr1 32829394 32829409 tfbsConsSites V$TAL1ALPHAE47_01 score:896, zScore:2.24, srow:69940
25204 chr1 32829394 32829409 tfbsConsSites V$TAL1BETAE47_01 score:875, zScore:2.27, srow:69941
25204 chr1 32829394 32829409 tfbsConsSites V$TAL1BETAITF2_01 score:855, zScore:1.88, srow:69942
25204 chr1 32829433 32829443 tfbsConsSites V$SREBP1_02 score:820, zScore:1.81, srow:69943
25204 chr1 32829436 32829458 tfbsConsSites V$PPARG_02 score:694, zScore:1.9, srow:69944
25204 chr1 32829443 32829470 tfbsConsSites V$PAX5_02 score:763, zScore:1.68, srow:69945
25204 chr1 32829471 32829487 tfbsConsSites V$RFX1_01 score:838, zScore:2.07, srow:69946
25204 chr1 32829499 32829516 tfbsConsSites V$IRF7_01 score:852, zScore:2.74, srow:69947
25204 chr1 32829360 32829360 cosmic COSM138183 srow:20560
25204 chr1 32829406 32829406 cosmic COSM426105 srow:20561
25204 chr1 32829418 32829418 cosmic COSM294920 srow:20562
25204 chr1 32829360 32829361 phastConsElements100way lod=19 score:285, srow:134191
25204 chr1 32829372 32829374 phastConsElements100way lod=19 score:285, srow:134192
25204 chr1 32829381 32829382 phastConsElements100way lod=27 score:320, srow:134193
25204 chr1 32829393 32829394 phastConsElements100way lod=29 score:327, srow:134194
25204 chr1 32829399 32829406 phastConsElements100way lod=67 score:410, srow:134195
25204 chr1 32829411 32829415 phastConsElements100way lod=43 score:366, srow:134196
25204 chr1 32829420 32829427 phastConsElements100way lod=63 score:404, srow:134197
25204 chr1 32829438 32829441 phastConsElements100way lod=39 score:356, srow:134198
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  • 25 of 33 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25204 cellmeth_recounts PrEC: 8, LNCaP: 30, DU145: 1
25204 cellmeth_diffreps_PrECvsDU145 A=11, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00313959514768542
25204 cellmeth_diffreps_LNCaPvsDU145 A=27.8, B=0.94, Length=380, Event=Down, log2FC=-4.89, padj=5.16679192666264e-06
25204 cellexp id=ENSG00000162526, name=TSSK3, PrEC=1, str=7, LNCaP=28, str=12, DU145=6, str=3
25204 cellexp id=ENSG00000225828, name=FAM229A, PrEC=23, str=50, LNCaP=219, str=74, DU145=69, str=30
25204 tcgaexp gene=TSSK3, entrez=81629, pos=chr1:32827862-32829924(+), B=37, L=33, M=35, H=47
25204 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305