DMR 25210 chr1:33772101-33773000 (900bp)

DMR Stats
Positionchr1:33772101-33773000 (View on UCSC)
Width900bp
Genomic Context3' end
Nearest GenesA3GALT2 (0bp away)
ANODEV p-value0.000887429651493
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25210 A3GALT2 613 uc031plq.1 chr1 33772367 33786699 - 634 70.44 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (70.44) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25210 chr1 33771721 33773055 wgEncodeRegDnaseClusteredV2 50 score:728, srow:27399
25210 chr1 33771880 33773088 wgEncodeRegTfbsClusteredV3 EZH2 score:497, expCount:3, expNums:6,36,38, expScores:326,216,218, srow:99165
25210 chr1 33772270 33772593 wgEncodeRegTfbsClusteredV3 BACH1 score:180, expCount:1, expNums:341, expScores:180, srow:99166
25210 chr1 33772667 33772996 wgEncodeRegTfbsClusteredV3 MAX score:158, expCount:2, expNums:352,460, expScores:158,130, srow:99167
25210 chr1 33772386 33772399 tfbsConsSites V$ROAZ_01 score:774, zScore:2.2, srow:72240
25210 chr1 33772598 33772626 tfbsConsSites V$MYOGNF1_01 score:756, zScore:2.03, srow:72241
25210 chr1 33772612 33772625 tfbsConsSites V$RREB1_01 score:812, zScore:1.75, srow:72242
25210 chr1 33772722 33772743 tfbsConsSites V$HEN1_02 score:836, zScore:2.89, srow:72243
25210 chr1 33772725 33772740 tfbsConsSites V$E47_02 score:881, zScore:1.79, srow:72244
25210 chr1 33772727 33772738 tfbsConsSites V$AREB6_03 score:878, zScore:1.72, srow:72245
25210 chr1 33772781 33772804 tfbsConsSites V$HTF_01 score:763, zScore:1.73, srow:72246
25210 chr1 33772784 33772800 tfbsConsSites V$XBP1_01 score:824, zScore:2.45, srow:72247
25210 chr1 33772789 33772796 tfbsConsSites V$ATF6_01 score:896, zScore:2.09, srow:72248
25210 chr1 33772837 33772856 tfbsConsSites V$MYCMAX_03 score:808, zScore:2.07, srow:72249
25210 chr1 33772865 33772888 tfbsConsSites V$HTF_01 score:829, zScore:3.04, srow:72250
25210 chr1 33772868 33772884 tfbsConsSites V$XBP1_01 score:856, zScore:3.04, srow:72251
25210 chr1 33772916 33772944 tfbsConsSites V$MYOGNF1_01 score:734, zScore:1.66, srow:72252
25210 chr1 33772993 33772993 cosmic COSM1502864 srow:21079
25210 chr1 33772374 33772377 phastConsElements100way lod=18 score:280, srow:138797
25210 chr1 33772386 33772411 phastConsElements100way lod=55 score:390, srow:138798
25210 chr1 33772420 33772426 phastConsElements100way lod=26 score:316, srow:138799
25210 chr1 33772436 33772440 phastConsElements100way lod=21 score:295, srow:138800
25210 chr1 33772448 33772462 phastConsElements100way lod=107 score:456, srow:138801
25210 chr1 33772464 33772489 phastConsElements100way lod=199 score:517, srow:138802
25210 chr1 33772496 33772529 phastConsElements100way lod=282 score:552, srow:138803
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  • 25 of 67 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25210 cellmeth_recounts PrEC: 43, LNCaP: 5495, DU145: 41
25210 cellmeth_diffreps_PrECvsLNCaP A=75, B=4509, Length=1400, Event=Up, log2FC=5.91, padj=0
25210 cellmeth_diffreps_PrECvsDU145 A=24, B=4, Length=280, Event=Down, log2FC=-2.58, padj=0.00252994212801597
25210 cellmeth_diffreps_LNCaPvsDU145 A=4840.64, B=36.48, Length=1600, Event=Down, log2FC=-7.05, padj=0
25210 cellexp id=ENSG00000184389, name=A3GALT2, PrEC=1, str=0, LNCaP=3, str=1, DU145=0, str=1
25210 cellexp id=ENSG00000225313, name=RP11-415J8.3, PrEC=13, str=103, LNCaP=12, str=12, DU145=9, str=11
25210 tcgameth site:cg00069002, B=0.39, L=0.52, H=0.51
25210 tcgameth site:cg08864344, B=0.45, L=0.65, H=0.63
25210 tcgameth site:cg13870102, B=0.26, L=0.46, H=0.46
25210 tcgameth site:cg18964375, B=0.72, L=0.83, H=0.81
25210 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305