DMR 25234 chr1:38600151-38600300 (150bp)

DMR Stats
Positionchr1:38600151-38600300 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesMIR3659 (45149bp away)
ANODEV p-value6.38188183111e-06
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25234 chr1 38600066 38600275 wgEncodeRegDnaseClusteredV2 11 score:310, srow:30804
25234 chr1 38599947 38600730 wgEncodeRegTfbsClusteredV3 EZH2 score:268, expCount:2, expNums:36,43, expScores:254,268, srow:109015
25234 chr1 38600134 38600161 tfbsConsSites V$PAX5_02 score:785, zScore:2.06, srow:87720
25234 chr1 38600149 38600172 tfbsConsSites V$BRACH_01 score:681, zScore:1.71, srow:87721
25234 chr1 38600150 38600170 tfbsConsSites V$NRSF_01 score:708, zScore:1.68, srow:87722
25234 chr1 38600151 38600162 tfbsConsSites V$EGR3_01 score:822, zScore:1.71, srow:87723
25234 chr1 38600163 38600170 tfbsConsSites V$E2F_02 score:892, zScore:1.95, srow:87724
25234 chr1 38600164 38600172 tfbsConsSites V$MSX1_01 score:917, zScore:2.11, srow:87725
25234 chr1 38600189 38600208 tfbsConsSites V$P53_01 score:725, zScore:2.58, srow:87726
25234 chr1 38600224 38600239 tfbsConsSites V$ELK1_01 score:863, zScore:2.1, srow:87727
25234 chr1 38600224 38600241 tfbsConsSites V$CMYB_01 score:853, zScore:2.83, srow:87728
25234 chr1 38600235 38600243 tfbsConsSites V$STAT_01 score:934, zScore:2.22, srow:87729
25234 chr1 38600236 38600252 tfbsConsSites V$LUN1_01 score:709, zScore:1.76, srow:87730
25234 chr1 38600242 38600250 tfbsConsSites V$HOXA3_01 score:949, zScore:2.31, srow:87731
25234 chr1 38600253 38600270 tfbsConsSites V$SRF_01 score:732, zScore:1.84, srow:87732
25234 chr1 38600264 38600284 tfbsConsSites V$PAX6_01 score:782, zScore:2.23, srow:87733
25234 chr1 38599970 38600304 phastConsElements100way lod=1984 score:745, srow:163668
  • 17 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25234 cellmeth_recounts PrEC: 25, LNCaP: 155, DU145: 1
25234 cellmeth_diffreps_PrECvsLNCaP A=39, B=127, Length=420, Event=Up, log2FC=1.7, padj=2.19359182307413e-10
25234 cellmeth_diffreps_PrECvsDU145 A=37, B=4, Length=380, Event=Down, log2FC=-3.21, padj=2.56539820116721e-06
25234 cellmeth_diffreps_LNCaPvsDU145 A=136.84, B=4.68, Length=480, Event=Down, log2FC=-4.87, padj=0
25234 tcgameth site:cg24080008, B=0.56, L=0.72, H=0.72
25234 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305