DMR 25239 chr1:39493951-39494200 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:39493951-39494200 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | NDUFS5 (0bp away) |
| ANODEV p-value | 0.00506705755349 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25239 | NDUFS5 | 691 | uc001ccx.3 | chr1 | 39491967 | 39500308 | + | 250 | 100.0 | 1.41 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
| 25239 | NDUFS5 | 691 | uc001ccy.3 | chr1 | 39491967 | 39500308 | + | 250 | 100.0 | 1.43 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25239 | chr1 | 39494157 | 39494163 | phastConsElements100way | lod=12 | score:240, srow:167027 |
| 25239 | chr1 | 39494183 | 39494194 | phastConsElements100way | lod=17 | score:274, srow:167028 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25239 | cellmeth_recounts | PrEC: 10, LNCaP: 3, DU145: 0 |  |
| 25239 | cellmeth_diffreps_PrECvsLNCaP | A=15, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.000225236251108575 |  |
| 25239 | cellmeth_diffreps_PrECvsDU145 | A=15, B=0, Length=360, Event=Down, log2FC=-Inf, padj=0.000269565104641442 |  |
| 25239 | cellexp | id=ENSG00000168653, name=NDUFS5, PrEC=5970, str=4404, LNCaP=8149, str=9211, DU145=2418, str=2225 |  |
| 25239 | tcgaexp | gene=NDUFS5, entrez=4725, pos=chr1:39491967-39500308(+), B=6051, L=7059, M=6197, H=5564 |  |
| 25239 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |