DMR 25244 chr1:40075451-40075950 (500bp)

DMR Stats
Positionchr1:40075451-40075950 (View on UCSC)
Width500bp
Genomic Contextintergenic
Nearest GenesHEYL (13152bp away)
ANODEV p-value0.00167300996324
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25244 chr1 40075301 40075570 wgEncodeRegDnaseClusteredV2 85 score:1000, srow:31867
25244 chr1 40075626 40076035 wgEncodeRegDnaseClusteredV2 20 score:724, srow:31868
25244 chr1 40075077 40075773 wgEncodeRegTfbsClusteredV3 POLR2A score:310, expCount:4, expNums:163,256,362,610, expScores:310,144,141,149, srow:112462
25244 chr1 40075151 40075640 wgEncodeRegTfbsClusteredV3 TAF1 score:191, expCount:1, expNums:157, expScores:191, srow:112463
25244 chr1 40075174 40075783 wgEncodeRegTfbsClusteredV3 SP4 score:302, expCount:1, expNums:155, expScores:302, srow:112464
25244 chr1 40075179 40075568 wgEncodeRegTfbsClusteredV3 ETS1 score:142, expCount:1, expNums:218, expScores:142, srow:112465
25244 chr1 40075215 40075710 wgEncodeRegTfbsClusteredV3 HMGN3 score:156, expCount:1, expNums:501, expScores:156, srow:112466
25244 chr1 40075219 40075556 wgEncodeRegTfbsClusteredV3 EBF1 score:236, expCount:2, expNums:86,292, expScores:236,225, srow:112467
25244 chr1 40075230 40075693 wgEncodeRegTfbsClusteredV3 MAZ score:535, expCount:4, expNums:297,396,440,512, expScores:377,159,308,535, srow:112468
25244 chr1 40075238 40075757 wgEncodeRegTfbsClusteredV3 SIN3A score:187, expCount:1, expNums:357, expScores:187, srow:112469
25244 chr1 40075238 40075613 wgEncodeRegTfbsClusteredV3 TBP score:197, expCount:1, expNums:359, expScores:197, srow:112470
25244 chr1 40075250 40075689 wgEncodeRegTfbsClusteredV3 CBX3 score:396, expCount:1, expNums:211, expScores:396, srow:112471
25244 chr1 40075251 40075594 wgEncodeRegTfbsClusteredV3 GABPA score:196, expCount:1, expNums:140, expScores:196, srow:112472
25244 chr1 40075274 40075637 wgEncodeRegTfbsClusteredV3 ELF1 score:169, expCount:1, expNums:88, expScores:169, srow:112473
25244 chr1 40075276 40075669 wgEncodeRegTfbsClusteredV3 YY1 score:246, expCount:5, expNums:119,162,164,203,245, expScores:228,246,140,175,165, srow:112474
25244 chr1 40075279 40075885 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:95, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,290,463,493,595,597,601,603,604,605,606,607,609,612,615,618,621,627,628,629,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:1000,1000,1000,161,455,367,320,227,1000,706,399,895,672,522,975,365,426,309,1000,1000,1000,187,1000,725,812,1000,1000,1000,966,1000,1000,741,1000,697,954,398,464,714,290,754,597,322,956,816,619,1000,654,878,940,549,540,607,907,287,830,1000,791,1000,1000,1000,1000,1000,409,1000,951,442,1000,1000,1000,706,1000,1000,1000,589,1000,162,704,1000,935,910,800,1000,1000,460,458,214,381,603,427,142,1000,947,328,856,255, srow:112475
25244 chr1 40075284 40075559 wgEncodeRegTfbsClusteredV3 USF2 score:154, expCount:1, expNums:360, expScores:154, srow:112476
25244 chr1 40075298 40075619 wgEncodeRegTfbsClusteredV3 ZNF143 score:450, expCount:3, expNums:322,361,552, expScores:350,450,230, srow:112477
25244 chr1 40075303 40075577 wgEncodeRegTfbsClusteredV3 RAD21 score:758, expCount:7, expNums:108,149,193,280,310,355,466, expScores:450,758,292,144,146,336,204, srow:112478
25244 chr1 40075310 40075605 wgEncodeRegTfbsClusteredV3 RCOR1 score:242, expCount:1, expNums:492, expScores:242, srow:112479
25244 chr1 40075310 40075594 wgEncodeRegTfbsClusteredV3 SMC3 score:413, expCount:2, expNums:313,408, expScores:413,331, srow:112480
25244 chr1 40075314 40075553 wgEncodeRegTfbsClusteredV3 SP2 score:256, expCount:1, expNums:235, expScores:256, srow:112481
25244 chr1 40075327 40075582 wgEncodeRegTfbsClusteredV3 HDAC2 score:146, expCount:1, expNums:141, expScores:146, srow:112482
25244 chr1 40075335 40075598 wgEncodeRegTfbsClusteredV3 PAX5 score:192, expCount:1, expNums:100, expScores:192, srow:112483
25244 chr1 40075339 40075598 wgEncodeRegTfbsClusteredV3 TCF12 score:157, expCount:1, expNums:159, expScores:157, srow:112484
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Omics Overlaps

Dmrid Omic Set Data Plot
25244 cellmeth_recounts PrEC: 21, LNCaP: 23, DU145: 12
25244 cellmeth_diffreps_PrECvsLNCaP A=50, B=14, Length=340, Event=Down, log2FC=-1.84, padj=0.000165301497006366
25244 cellmeth_diffreps_PrECvsDU145 A=50, B=8, Length=400, Event=Down, log2FC=-2.64, padj=5.27606642841964e-07
25244 tcgameth site:cg15123755, B=0.68, L=0.73, H=0.72
25244 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305