DMR 25253 chr1:40780801-40782000 (1200bp)

DMR Stats
Positionchr1:40780801-40782000 (View on UCSC)
Width1200bp
Genomic Contextexon
Nearest GenesCOL9A2 (0bp away)
ANODEV p-value4.09578452853e-09
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25253 COL9A2 715 uc001cfh.1 chr1 40766163 40782981 - 1200 100.0 0.03 0 0.0 E1 (0), I1 (55.42), E2 (6.25), I2 (38.42), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0) 0.0
25253 COL9A2 715 uc001cfi.1 chr1 40766163 40783060 - 1200 100.0 0.03 0 0.0 E1 (0), I1 (55.42), E2 (6.25), I2 (38.42), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25253 chr1 40780466 40781255 wgEncodeRegDnaseClusteredV2 123 score:1000, srow:32441
25253 chr1 40781286 40782215 wgEncodeRegDnaseClusteredV2 57 score:804, srow:32442
25253 chr1 40780543 40781375 wgEncodeRegTfbsClusteredV3 RBBP5 score:245, expCount:2, expNums:8,33, expScores:176,245, srow:114840
25253 chr1 40780662 40781191 wgEncodeRegTfbsClusteredV3 EZH2 score:273, expCount:1, expNums:1, expScores:273, srow:114841
25253 chr1 40780666 40781289 wgEncodeRegTfbsClusteredV3 PHF8 score:255, expCount:1, expNums:30, expScores:255, srow:114842
25253 chr1 40780735 40781405 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:24, expNums:104,105,123,124,131,146,163,191,192,229,256,306,326,328,330,332,334,336,338,340,445,446,577,585, expScores:431,1000,474,535,528,268,253,437,798,554,366,306,798,614,221,537,216,239,255,316,245,464,240,683, srow:114843
25253 chr1 40780784 40781303 wgEncodeRegTfbsClusteredV3 SIN3A score:338, expCount:1, expNums:357, expScores:338, srow:114844
25253 chr1 40780858 40781401 wgEncodeRegTfbsClusteredV3 NFIC score:208, expCount:1, expNums:187, expScores:208, srow:114845
25253 chr1 40780872 40781273 wgEncodeRegTfbsClusteredV3 TBP score:225, expCount:3, expNums:359,452,545, expScores:218,225,198, srow:114846
25253 chr1 40780874 40781336 wgEncodeRegTfbsClusteredV3 MYC score:462, expCount:6, expNums:487,488,489,490,575,620, expScores:309,190,397,156,462,121, srow:114847
25253 chr1 40780886 40781405 wgEncodeRegTfbsClusteredV3 FOXM1 score:261, expCount:1, expNums:90, expScores:261, srow:114848
25253 chr1 40780889 40781296 wgEncodeRegTfbsClusteredV3 TAF1 score:312, expCount:3, expNums:115,157,238, expScores:171,312,179, srow:114849
25253 chr1 40780905 40781400 wgEncodeRegTfbsClusteredV3 HMGN3 score:254, expCount:1, expNums:501, expScores:254, srow:114850
25253 chr1 40780907 40781346 wgEncodeRegTfbsClusteredV3 CBX3 score:495, expCount:1, expNums:211, expScores:495, srow:114851
25253 chr1 40780908 40781363 wgEncodeRegTfbsClusteredV3 JUND score:236, expCount:2, expNums:507,594, expScores:214,236, srow:114852
25253 chr1 40780911 40781346 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:5, expNums:223,296,439,511,576, expScores:1000,225,147,494,438, srow:114853
25253 chr1 40780917 40781356 wgEncodeRegTfbsClusteredV3 BCLAF1 score:281, expCount:2, expNums:84,210, expScores:281,136, srow:114854
25253 chr1 40780917 40781352 wgEncodeRegTfbsClusteredV3 MXI1 score:258, expCount:2, expNums:298,441, expScores:189,258, srow:114855
25253 chr1 40780919 40781282 wgEncodeRegTfbsClusteredV3 GTF2F1 score:189, expCount:1, expNums:349, expScores:189, srow:114856
25253 chr1 40780923 40781292 wgEncodeRegTfbsClusteredV3 RCOR1 score:393, expCount:2, expNums:429,492, expScores:231,393, srow:114857
25253 chr1 40780924 40781379 wgEncodeRegTfbsClusteredV3 CCNT2 score:124, expCount:1, expNums:476, expScores:124, srow:114858
25253 chr1 40780930 40781413 wgEncodeRegTfbsClusteredV3 SETDB1 score:221, expCount:1, expNums:533, expScores:221, srow:114859
25253 chr1 40780937 40781346 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:181, expCount:1, expNums:316, expScores:181, srow:114860
25253 chr1 40780938 40781320 wgEncodeRegTfbsClusteredV3 YY1 score:439, expCount:8, expNums:119,128,133,162,164,203,244,245, expScores:439,291,193,229,138,187,197,196, srow:114861
25253 chr1 40780941 40781269 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:1000, srow:114862
  • Page 1 of 5
  • 25 of 102 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25253 cellmeth_recounts PrEC: 6, LNCaP: 108, DU145: 0
25253 cellmeth_diffreps_PrECvsLNCaP A=8, B=70, Length=540, Event=Up, log2FC=3.13, padj=5.67025476811687e-12
25253 cellmeth_diffreps_LNCaPvsDU145 A=245.88, B=0.94, Length=1960, Event=Down, log2FC=-8.04, padj=0
25253 cellexp id=ENSG00000049089, name=COL9A2, PrEC=50, str=119, LNCaP=526, str=422, DU145=63, str=50
25253 tcgameth site:cg06721528, B=0.14, L=0.5, H=0.36
25253 tcgameth site:cg07367434, B=0.02, L=0.24, H=0.15
25253 tcgameth site:cg10512203, B=0.31, L=0.64, H=0.58
25253 tcgameth site:cg14036923, B=0.07, L=0.44, H=0.3
25253 tcgameth site:cg16989117, B=0.49, L=0.65, H=0.59
25253 tcgameth site:cg20145692, B=0.05, L=0.48, H=0.34
25253 tcgameth site:cg22030684, B=0.2, L=0.41, H=0.31
25253 tcgaexp gene=COL9A2, entrez=1298, pos=chr1:40766163-40783060(-), B=3821, L=9465, M=12254, H=21056
25253 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305