DMR 25265 chr1:41828151-41828300 (150bp)

DMR Stats
Positionchr1:41828151-41828300 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest Genes5S_rRNA (104307bp away)
ANODEV p-value0.0247932862014
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25265 chr1 41828066 41828695 wgEncodeRegDnaseClusteredV2 29 score:407, srow:33173
25265 chr1 41827306 41828687 wgEncodeRegTfbsClusteredV3 EZH2 score:442, expCount:5, expNums:21,36,38,40,43, expScores:338,333,223,257,305, srow:118185
25265 chr1 41828041 41828280 wgEncodeRegTfbsClusteredV3 EGR1 score:504, expCount:2, expNums:87,216, expScores:198,504, srow:118189
25265 chr1 41828147 41828174 tfbsConsSites V$PAX5_02 score:780, zScore:1.97, srow:98512
25265 chr1 41828172 41828191 tfbsConsSites V$P53_01 score:689, zScore:1.95, srow:98513
25265 chr1 41828176 41828187 tfbsConsSites V$EGR1_01 score:853, zScore:2.08, srow:98514
25265 chr1 41828188 41828209 tfbsConsSites V$HEN1_02 score:800, zScore:2.37, srow:98515
25265 chr1 41828191 41828206 tfbsConsSites V$E47_02 score:883, zScore:1.82, srow:98516
25265 chr1 41828235 41828250 tfbsConsSites V$HAND1E47_01 score:837, zScore:1.68, srow:98517
25265 chr1 41828243 41828255 tfbsConsSites V$TCF11_01 score:910, zScore:1.66, srow:98518
25265 chr1 41828246 41828256 tfbsConsSites V$SREBP1_02 score:871, zScore:2.65, srow:98519
25265 chr1 41828199 41828205 phastConsElements100way lod=21 score:295, srow:180863
25265 chr1 41828237 41828240 phastConsElements100way lod=16 score:268, srow:180864
25265 chr1 41828248 41828251 phastConsElements100way lod=16 score:268, srow:180865
25265 chr1 41826681 41828290 cpgIsland CpG: 158 length:1610, cpgNum:158, gcNum:1050, perCpg:19.6, perGc:65.2, obsExp:0.93, srow:968
25265 chr1 41828291 41831976 cpgShore — values(x.gr)[overs$srow, ]:1754
  • 16 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25265 cellmeth_recounts PrEC: 13, LNCaP: 197, DU145: 0
25265 cellmeth_diffreps_PrECvsLNCaP A=26, B=197, Length=760, Event=Up, log2FC=2.92, padj=0
25265 cellmeth_diffreps_PrECvsDU145 A=20, B=0, Length=380, Event=Down, log2FC=-Inf, padj=1.02756470669418e-05
25265 cellmeth_diffreps_LNCaPvsDU145 A=229.84, B=2.81, Length=1000, Event=Down, log2FC=-6.36, padj=0
25265 cellexp id=ENSG00000204060, name=FOXO6, PrEC=5, str=2, LNCaP=183, str=62, DU145=95, str=23
25265 tcgameth site:cg18742814, B=0.3, L=0.51, H=0.43
25265 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305