DMR 25290 chr1:45251751-45252450 (700bp)

DMR Stats
Positionchr1:45251751-45252450 (View on UCSC)
Width700bp
Genomic Contextexon
Nearest GenesBEST4 (0bp away)
ANODEV p-value3.52872498114e-06
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25290 BEST4 796 uc001cmm.3 chr1 45249257 45253426 - 700 100.0 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (11.86), E3 (33.43), I3 (33.57), E4 (21.43), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25290 chr1 45251821 45252575 wgEncodeRegDnaseClusteredV2 116 score:1000, srow:35992
25290 chr1 45251706 45252437 wgEncodeRegTfbsClusteredV3 POLR2A score:923, expCount:16, expNums:61,62,105,146,147,163,256,326,330,332,336,338,340,366,524,596, expScores:923,544,858,358,298,301,236,344,175,401,230,228,209,151,196,289, srow:128507
25290 chr1 45251715 45252254 wgEncodeRegTfbsClusteredV3 EP300 score:451, expCount:3, expNums:29,60,190, expScores:451,252,276, srow:128508
25290 chr1 45251728 45252453 wgEncodeRegTfbsClusteredV3 SIN3A score:244, expCount:1, expNums:357, expScores:177, srow:128509
25290 chr1 45251732 45252344 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:98, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:724,1000,1000,931,1000,1000,1000,1000,1000,147,786,1000,1000,1000,1000,455,400,200,939,924,1000,692,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,956,848,561,1000,1000,595,711,553,798,712,1000,1000,931,1000,1000,1000,1000,1000,1000,1000,1000,324,1000,222,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,876,1000,981,1000,335,1000,1000,1000,1000,1000,1000,1000,1000,1000,302,405,1000,1000,925,1000,1000,1000,1000,1000, srow:128510
25290 chr1 45251749 45252443 wgEncodeRegTfbsClusteredV3 MYC score:419, expCount:7, expNums:347,485,487,488,489,560,600, expScores:220,133,223,160,337,419,196, srow:128511
25290 chr1 45251770 45252139 wgEncodeRegTfbsClusteredV3 MAZ score:312, expCount:1, expNums:512, expScores:312, srow:128512
25290 chr1 45251771 45252146 wgEncodeRegTfbsClusteredV3 TBP score:140, expCount:1, expNums:359, expScores:140, srow:128513
25290 chr1 45251773 45252375 wgEncodeRegTfbsClusteredV3 MAX score:677, expCount:7, expNums:223,278,296,352,439,460,511, expScores:677,360,495,184,138,271,228, srow:128514
25290 chr1 45251778 45252181 wgEncodeRegTfbsClusteredV3 ZBTB7A score:178, expCount:1, expNums:247, expScores:178, srow:128515
25290 chr1 45251782 45252111 wgEncodeRegTfbsClusteredV3 IRF4 score:163, expCount:1, expNums:92, expScores:163, srow:128516
25290 chr1 45251783 45252442 wgEncodeRegTfbsClusteredV3 KAP1 score:375, expCount:1, expNums:588, expScores:375, srow:128517
25290 chr1 45251788 45252082 wgEncodeRegTfbsClusteredV3 SMC3 score:431, expCount:3, expNums:313,450,535, expScores:381,155,431, srow:128518
25290 chr1 45251791 45252375 wgEncodeRegTfbsClusteredV3 E2F6 score:248, expCount:2, expNums:215,495, expScores:155,248, srow:128519
25290 chr1 45251792 45252177 wgEncodeRegTfbsClusteredV3 YY1 score:214, expCount:3, expNums:119,162,203, expScores:199,214,165, srow:128520
25290 chr1 45251798 45252109 wgEncodeRegTfbsClusteredV3 ZNF143 score:582, expCount:3, expNums:322,361,552, expScores:519,475,582, srow:128521
25290 chr1 45251799 45252118 wgEncodeRegTfbsClusteredV3 JUND score:290, expCount:1, expNums:350, expScores:290, srow:128522
25290 chr1 45251802 45252416 wgEncodeRegTfbsClusteredV3 MXI1 score:287, expCount:3, expNums:298,353,441, expScores:287,170,268, srow:128523
25290 chr1 45251808 45252074 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:11, expNums:108,149,193,231,264,280,310,355,448,466,529, expScores:526,1000,1000,1000,1000,268,310,1000,806,1000,359, srow:128524
25290 chr1 45251817 45252104 wgEncodeRegTfbsClusteredV3 TCF12 score:267, expCount:2, expNums:116,159, expScores:267,140, srow:128525
25290 chr1 45251824 45252172 wgEncodeRegTfbsClusteredV3 NR3C1 score:142, expCount:2, expNums:56,58, expScores:128,142, srow:128526
25290 chr1 45251827 45252166 wgEncodeRegTfbsClusteredV3 TAF1 score:139, expCount:1, expNums:127, expScores:139, srow:128527
25290 chr1 45251832 45252155 wgEncodeRegTfbsClusteredV3 BACH1 score:315, expCount:1, expNums:341, expScores:315, srow:128528
25290 chr1 45251849 45252152 wgEncodeRegTfbsClusteredV3 FOXP2 score:140, expCount:1, expNums:251, expScores:140, srow:128529
25290 chr1 45251861 45252385 wgEncodeRegTfbsClusteredV3 ZBTB33 score:149, expCount:2, expNums:120,246, expScores:130,149, srow:128530
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  • 25 of 96 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25290 cellmeth_recounts PrEC: 15, LNCaP: 117, DU145: 0
25290 cellmeth_diffreps_PrECvsLNCaP A=21, B=86, Length=460, Event=Up, log2FC=2.03, padj=6.10668622411807e-09
25290 cellmeth_diffreps_PrECvsDU145 A=22, B=0, Length=400, Event=Down, log2FC=-Inf, padj=2.6934033431747e-06
25290 cellmeth_diffreps_LNCaPvsDU145 A=94.08, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0
25290 cellexp id=ENSG00000142959, name=BEST4, PrEC=75, str=28, LNCaP=25, str=5, DU145=32, str=11
25290 tcgameth site:cg06170941, B=0.33, L=0.47, H=0.49
25290 tcgaexp gene=BEST4, entrez=266675, pos=chr1:45249257-45253426(-), B=15, L=12, M=8, H=6
25290 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305