DMR 25329 chr1:48059051-48059300 (250bp)

DMR Stats
Positionchr1:48059051-48059300 (View on UCSC)
Width250bp
Genomic Contextintergenic
Nearest GenesFOXD2 (152687bp away)
ANODEV p-value0.000408830044534
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25329 chr1 48058686 48059355 wgEncodeRegDnaseClusteredV2 15 score:407, srow:37731
25329 chr1 48058504 48059444 wgEncodeRegTfbsClusteredV3 EZH2 score:424, expCount:4, expNums:6,19,36,40, expScores:424,144,214,334, srow:136373
25329 chr1 48058673 48059082 wgEncodeRegTfbsClusteredV3 GATA2 score:321, expCount:1, expNums:586, expScores:321, srow:136374
25329 chr1 48058726 48059101 wgEncodeRegTfbsClusteredV3 TBP score:263, expCount:1, expNums:359, expScores:263, srow:136375
25329 chr1 48058797 48059606 wgEncodeRegTfbsClusteredV3 SUZ12 score:214, expCount:1, expNums:578, expScores:214, srow:136376
25329 chr1 48059072 48059085 tfbsConsSites V$ELK1_02 score:876, zScore:1.89, srow:117644
25329 chr1 48059076 48059093 tfbsConsSites V$IRF7_01 score:800, zScore:1.71, srow:117645
25329 chr1 48059079 48059091 tfbsConsSites V$IRF1_01 score:805, zScore:1.64, srow:117646
25329 chr1 48059083 48059097 tfbsConsSites V$SPZ1_01 score:871, zScore:1.79, srow:117647
25329 chr1 48059088 48059109 tfbsConsSites V$HEN1_02 score:756, zScore:1.75, srow:117648
25329 chr1 48059089 48059106 tfbsConsSites V$AP4_01 score:826, zScore:1.9, srow:117649
25329 chr1 48059091 48059106 tfbsConsSites V$E47_02 score:898, zScore:2.05, srow:117650
25329 chr1 48059012 48059116 phastConsElements100way lod=392 score:585, srow:213215
25329 chr1 48059121 48059125 phastConsElements100way lod=17 score:274, srow:213216
25329 chr1 48058794 48059230 cpgIsland CpG: 37 length:437, cpgNum:37, gcNum:284, perCpg:16.9, perGc:65, obsExp:0.81, srow:1086
25329 chr1 48059231 48061230 cpgShore — values(x.gr)[overs$srow, ]:1979
  • 16 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25329 cellmeth_recounts PrEC: 1, LNCaP: 21, DU145: 6
25329 cellmeth_diffreps_PrECvsLNCaP A=1, B=17, Length=300, Event=Up, log2FC=4.09, padj=0.00122106257116317
25329 tcgameth site:cg25137711, B=0.3, L=0.6, H=0.57
25329 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305