DMR 25339 chr1:50884301-50884550 (250bp)

DMR Stats
Positionchr1:50884301-50884550 (View on UCSC)
Width250bp
Genomic Contextexon
Nearest GenesDMRTA2 (0bp away)
ANODEV p-value1.53325553245e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25339 DMRTA2 865 uc010ona.2 chr1 50883223 50887304 - 250 100.0 0.53 0 0.0 E1 (0), I1 (0), E2 (100) 0.0
25339 DMRTA2 865 uc010onb.2 chr1 50883223 50889119 - 250 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25339 chr1 50883846 50885555 wgEncodeRegDnaseClusteredV2 57 score:1000, srow:38819
25339 chr1 50880621 50894475 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:12, expNums:3,6,13,15,17,19,21,25,36,38,40,43, expScores:229,478,312,306,169,106,382,320,238,223,211,260, srow:138324
25339 chr1 50884208 50885621 wgEncodeRegTfbsClusteredV3 SUZ12 score:566, expCount:2, expNums:358,578, expScores:371,297, srow:138336
25339 chr1 50884240 50884855 wgEncodeRegTfbsClusteredV3 CHD1 score:232, expCount:1, expNums:4, expScores:232, srow:138337
25339 chr1 50884341 50884580 wgEncodeRegTfbsClusteredV3 EGR1 score:163, expCount:1, expNums:87, expScores:163, srow:138338
25339 chr1 50884423 50884766 wgEncodeRegTfbsClusteredV3 GABPA score:206, expCount:1, expNums:140, expScores:206, srow:138339
25339 chr1 50884360 50884373 tfbsConsSites V$COUP_01 score:845, zScore:1.7, srow:125798
25339 chr1 50884380 50884391 tfbsConsSites V$EGR1_01 score:872, zScore:2.39, srow:125799
25339 chr1 50884398 50884425 tfbsConsSites V$PAX5_01 score:805, zScore:2.34, srow:125800
25339 chr1 50884428 50884448 tfbsConsSites V$PAX4_01 score:834, zScore:2.32, srow:125801
25339 chr1 50884429 50884447 tfbsConsSites V$PAX2_01 score:833, zScore:3.07, srow:125802
25339 chr1 50884429 50884449 tfbsConsSites V$PAX6_01 score:820, zScore:3.05, srow:125803
25339 chr1 50884498 50884526 tfbsConsSites V$MYOGNF1_01 score:745, zScore:1.84, srow:125804
25339 chr1 50884525 50884542 tfbsConsSites V$CMYB_01 score:800, zScore:1.87, srow:125805
25339 chr1 50884526 50884543 tfbsConsSites V$AP4_01 score:824, zScore:1.87, srow:125806
25339 chr1 50884356 50884356 cosmic COSM1474055 srow:32554
25339 chr1 50884382 50884382 cosmic COSM1343256 srow:32555
25339 chr1 50884404 50884404 cosmic COSM382964 srow:32556
25339 chr1 50884447 50884447 cosmic COSM1343257 srow:32557
25339 chr1 50884472 50884472 cosmic COSM1343258 srow:32558
25339 chr1 50884334 50884348 phastConsElements100way lod=125 score:471, srow:224010
25339 chr1 50884350 50884366 phastConsElements100way lod=165 score:499, srow:224011
25339 chr1 50884368 50884393 phastConsElements100way lod=190 score:513, srow:224012
25339 chr1 50884395 50884408 phastConsElements100way lod=160 score:496, srow:224013
25339 chr1 50884413 50884414 phastConsElements100way lod=12 score:240, srow:224014
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  • 25 of 34 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25339 cellmeth_recounts PrEC: 2, LNCaP: 1964, DU145: 13
25339 cellmeth_diffreps_PrECvsLNCaP A=60, B=5193, Length=4920, Event=Up, log2FC=6.44, padj=0
25339 cellmeth_diffreps_LNCaPvsDU145 A=5167.76, B=34.61, Length=3160, Event=Down, log2FC=-7.22, padj=0
25339 cellexp id=ENSG00000142700, name=DMRTA2, PrEC=0, str=2, LNCaP=2, str=1, DU145=29, str=13
25339 tcgameth site:cg09792881, B=0.11, L=0.31, H=0.37
25339 tcgameth site:cg10512745, B=0.08, L=0.44, H=0.51
25339 tcgaexp gene=DMRTA2, entrez=63950, pos=chr1:50883223-50889119(-), B=1, L=4, M=3, H=2
25339 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305