DMR 25341 chr1:50886051-50887300 (1250bp)

DMR Stats
Positionchr1:50886051-50887300 (View on UCSC)
Width1250bp
Genomic Contextpromoter
Nearest GenesDMRTA2 (0bp away)
ANODEV p-value1.66569986496e-07
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25341 DMRTA2 865 uc010ona.2 chr1 50883223 50887304 - 1250 100.0 0.38 0 39.68 E1 (52.08), I1 (47.92), E2 (0) 0.0
25341 DMRTA2 865 uc010onb.2 chr1 50883223 50889119 - 1250 100.0 0.38 0 0.0 E1 (0), I1 (6.8), E2 (45.36), I2 (47.92), E3 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25341 chr1 50885606 50886575 wgEncodeRegDnaseClusteredV2 35 score:402, srow:38820
25341 chr1 50886586 50887015 wgEncodeRegDnaseClusteredV2 34 score:853, srow:38821
25341 chr1 50887106 50887755 wgEncodeRegDnaseClusteredV2 21 score:603, srow:38822
25341 chr1 50880621 50894475 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:12, expNums:3,6,13,15,17,19,21,25,36,38,40,43, expScores:229,478,312,306,169,106,382,320,238,223,211,260, srow:138324
25341 chr1 50886174 50887158 wgEncodeRegTfbsClusteredV3 SUZ12 score:508, expCount:2, expNums:358,578, expScores:345,488, srow:138341
25341 chr1 50886303 50887224 wgEncodeRegTfbsClusteredV3 RBBP5 score:258, expCount:1, expNums:8, expScores:242, srow:138342
25341 chr1 50886711 50887049 wgEncodeRegTfbsClusteredV3 YY1 score:532, expCount:3, expNums:128,162,579, expScores:158,532,219, srow:138343
25341 chr1 50886729 50886978 wgEncodeRegTfbsClusteredV3 NRF1 score:163, expCount:1, expNums:354, expScores:163, srow:138344
25341 chr1 50886746 50887027 wgEncodeRegTfbsClusteredV3 CTCF score:301, expCount:7, expNums:603,605,606,609,635,654,687, expScores:301,244,147,140,294,111,158, srow:138345
25341 chr1 50886639 50886660 tfbsConsSites V$HEN1_01 score:847, zScore:2.78, srow:125859
25341 chr1 50886640 50886659 tfbsConsSites V$ARNT_02 score:802, zScore:2.13, srow:125860
25341 chr1 50886643 50886655 tfbsConsSites V$AREB6_01 score:935, zScore:2.58, srow:125861
25341 chr1 50886689 50886716 tfbsConsSites V$PAX5_02 score:866, zScore:3.45, srow:125862
25341 chr1 50886692 50886704 tfbsConsSites V$ZID_01 score:879, zScore:2.25, srow:125863
25341 chr1 50886706 50886717 tfbsConsSites V$AP2_Q6 score:879, zScore:1.72, srow:125864
25341 chr1 50886784 50886794 tfbsConsSites V$CP2_01 score:887, zScore:1.86, srow:125865
25341 chr1 50886818 50886835 tfbsConsSites V$AHR_01 score:787, zScore:2.06, srow:125866
25341 chr1 50886849 50886877 tfbsConsSites V$MYOGNF1_01 score:734, zScore:1.66, srow:125867
25341 chr1 50886863 50886882 tfbsConsSites V$MYCMAX_03 score:799, zScore:1.95, srow:125868
25341 chr1 50886865 50886879 tfbsConsSites V$E47_01 score:858, zScore:1.69, srow:125869
25341 chr1 50886867 50886878 tfbsConsSites V$LMO2COM_01 score:928, zScore:1.83, srow:125870
25341 chr1 50886867 50886878 tfbsConsSites V$MYOD_01 score:922, zScore:2.26, srow:125871
25341 chr1 50886871 50886893 tfbsConsSites V$PPARG_02 score:699, zScore:1.99, srow:125872
25341 chr1 50886874 50886901 tfbsConsSites V$PAX5_01 score:772, zScore:1.83, srow:125873
25341 chr1 50886875 50886887 tfbsConsSites V$TCF11_01 score:920, zScore:1.83, srow:125874
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  • 25 of 86 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25341 cellmeth_recounts PrEC: 48, LNCaP: 5672, DU145: 72
25341 cellmeth_diffreps_PrECvsLNCaP A=76, B=4605, Length=2000, Event=Up, log2FC=5.92, padj=0
25341 cellmeth_diffreps_PrECvsDU145 A=36, B=8, Length=380, Event=Down, log2FC=-2.17, padj=0.000542086627991997
25341 cellmeth_diffreps_PrECvsDU145 A=0, B=13, Length=300, Event=Up, log2FC=Inf, padj=0.000941091010072773
25341 cellmeth_diffreps_LNCaPvsDU145 A=4920.81, B=67.35, Length=1980, Event=Down, log2FC=-6.19, padj=0
25341 cellexp id=ENSG00000142700, name=DMRTA2, PrEC=0, str=2, LNCaP=2, str=1, DU145=29, str=13
25341 tcgameth site:cg00945234, B=0.25, L=0.47, H=0.45
25341 tcgameth site:cg04455430, B=0.26, L=0.48, H=0.49
25341 tcgameth site:cg07362328, B=0.33, L=0.53, H=0.51
25341 tcgameth site:cg12756396, B=0.17, L=0.49, H=0.51
25341 tcgameth site:cg13909582, B=0.47, L=0.6, H=0.58
25341 tcgameth site:cg16732616, B=0.07, L=0.52, H=0.52
25341 tcgameth site:cg25191628, B=0.08, L=0.4, H=0.42
25341 tcgaexp gene=DMRTA2, entrez=63950, pos=chr1:50883223-50889119(-), B=1, L=4, M=3, H=2
25341 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305