DMR 25346 chr1:51442251-51442400 (150bp)

DMR Stats
Positionchr1:51442251-51442400 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesCDKN2C (1941bp away)
ANODEV p-value0.00957297599442
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25346 chr1 51441826 51444150 wgEncodeRegDnaseClusteredV2 120 score:1000, srow:39006
25346 chr1 51441942 51442644 wgEncodeRegTfbsClusteredV3 CHD1 score:236, expCount:1, expNums:23, expScores:195, srow:138949
25346 chr1 51441987 51442796 wgEncodeRegTfbsClusteredV3 SUZ12 score:283, expCount:1, expNums:578, expScores:283, srow:138950
25346 chr1 51441989 51442584 wgEncodeRegTfbsClusteredV3 ZNF263 score:258, expCount:1, expNums:368, expScores:258, srow:138951
25346 chr1 51442010 51442385 wgEncodeRegTfbsClusteredV3 TBP score:160, expCount:1, expNums:412, expScores:160, srow:138953
25346 chr1 51442017 51442740 wgEncodeRegTfbsClusteredV3 RBBP5 score:349, expCount:1, expNums:33, expScores:349, srow:138954
25346 chr1 51442072 51444377 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:43, expNums:61,62,105,123,124,130,131,168,192,206,228,229,249,256,306,307,326,328,330,332,334,336,338,340,362,402,445,446,520,522,523,525,563,564,577,583,585,596,599,613,619,622,637, expScores:961,305,670,270,275,325,348,286,499,160,252,398,157,196,287,142,970,280,243,277,337,300,411,319,113,321,87,262,207,240,236,152,253,270,196,447,373,284,147,187,124,328,162, srow:138955
25346 chr1 51442152 51442447 wgEncodeRegTfbsClusteredV3 RCOR1 score:315, expCount:1, expNums:492, expScores:315, srow:138956
25346 chr1 51442228 51442683 wgEncodeRegTfbsClusteredV3 GTF2F1 score:136, expCount:1, expNums:389, expScores:136, srow:138957
25346 chr1 51442240 51443192 wgEncodeRegTfbsClusteredV3 EZH2 score:598, expCount:1, expNums:6, expScores:359, srow:138958
25346 chr1 51442290 51442294 phastConsElements100way lod=14 score:255, srow:226988
25346 chr1 51441312 51443311 cpgShore — values(x.gr)[overs$srow, ]:2013
  • 12 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25346 cellmeth_recounts PrEC: 23, LNCaP: 137, DU145: 0
25346 cellmeth_diffreps_PrECvsLNCaP A=35, B=212, Length=920, Event=Up, log2FC=2.6, padj=0
25346 cellmeth_diffreps_PrECvsDU145 A=34, B=0, Length=400, Event=Down, log2FC=-Inf, padj=7.9497164350672e-10
25346 cellmeth_diffreps_LNCaPvsDU145 A=248.02, B=0, Length=1260, Event=Down, log2FC=-Inf, padj=0
25346 tcgameth site:cg21140898, B=0.82, L=0.86, H=0.81
25346 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305