DMR 25351 chr1:53099201-53099350 (150bp)

DMR Stats
Positionchr1:53099201-53099350 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesFAM159A (0bp away)
ANODEV p-value0.0128635552518
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25351 FAM159A 888 uc001cuf.3 chr1 53099066 53122737 + 150 100.0 1.58 0 100.0 E1 (98), I1 (2.67), E2 (0), I2 (0), E3 (0) 0.0
25351 FAM159A 888 uc001cug.1 chr1 53099066 53134793 + 150 100.0 0.32 1 100.0 E1 (98), I1 (2.67), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
25351 FAM159A 888 uc001cuh.3 chr1 53099066 53135339 + 150 100.0 0.74 1 100.0 E1 (98), I1 (2.67), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25351 chr1 53098666 53099355 wgEncodeRegDnaseClusteredV2 61 score:761, srow:39864
25351 chr1 53098190 53099915 wgEncodeRegTfbsClusteredV3 EZH2 score:586, expCount:8, expNums:6,15,19,21,36,38,40,43, expScores:401,267,105,353,282,242,287,367, srow:142786
25351 chr1 53098457 53099350 wgEncodeRegTfbsClusteredV3 RBBP5 score:323, expCount:1, expNums:8, expScores:185, srow:142788
25351 chr1 53099105 53099474 wgEncodeRegTfbsClusteredV3 RUNX3 score:349, expCount:1, expNums:109, expScores:349, srow:142796
25351 chr1 53099305 53099614 wgEncodeRegTfbsClusteredV3 SUZ12 score:121, expCount:1, expNums:358, expScores:121, srow:142797
25351 chr1 53099204 53099217 tfbsConsSites V$P300_01 score:845, zScore:1.73, srow:130509
25351 chr1 53099233 53099244 tfbsConsSites V$AP2_Q6 score:925, zScore:2.43, srow:130510
25351 chr1 53099253 53099266 tfbsConsSites V$MRF2_01 score:834, zScore:1.81, srow:130511
25351 chr1 53099268 53099275 tfbsConsSites V$STAT3_02 score:989, zScore:1.72, srow:130512
25351 chr1 53099277 53099295 tfbsConsSites V$SEF1_C score:721, zScore:1.69, srow:130513
25351 chr1 53099278 53099283 tfbsConsSites V$AML1_01 score:1000, zScore:1.78, srow:130514
25351 chr1 53099279 53099293 tfbsConsSites V$CDPCR3_01 score:808, zScore:2.12, srow:130515
25351 chr1 53099282 53099290 tfbsConsSites V$MSX1_01 score:909, zScore:1.96, srow:130516
25351 chr1 53099323 53099341 tfbsConsSites V$SEF1_C score:741, zScore:2.08, srow:130517
25351 chr1 53099325 53099339 tfbsConsSites V$CDPCR3_01 score:809, zScore:2.14, srow:130518
25351 chr1 53099335 53099340 tfbsConsSites V$AML1_01 score:1000, zScore:1.78, srow:130519
25351 chr1 53099342 53099354 tfbsConsSites V$AREB6_01 score:924, zScore:2.4, srow:130520
25351 chr1 53099277 53099277 cosmic COSM1343400 srow:33635
25351 chr1 53099337 53099337 cosmic COSM681787 srow:33636
25351 chr1 53099199 53099215 phastConsElements100way lod=91 score:440, srow:234879
25351 chr1 53099217 53099247 phastConsElements100way lod=196 score:516, srow:234880
25351 chr1 53099250 53099251 phastConsElements100way lod=14 score:255, srow:234881
25351 chr1 53099253 53099254 phastConsElements100way lod=30 score:330, srow:234882
25351 chr1 53099256 53099353 phastConsElements100way lod=1028 score:680, srow:234883
25351 chr1 53098630 53099303 cpgIsland CpG: 70 length:674, cpgNum:70, gcNum:399, perCpg:20.8, perGc:59.2, obsExp:1.19, srow:1124
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  • 25 of 26 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25351 cellmeth_recounts PrEC: 7, LNCaP: 387, DU145: 8
25351 cellmeth_diffreps_PrECvsLNCaP A=40, B=975, Length=1300, Event=Up, log2FC=4.61, padj=0
25351 cellmeth_diffreps_LNCaPvsDU145 A=1042.32, B=12.16, Length=1360, Event=Down, log2FC=-6.42, padj=0
25351 cellexp id=ENSG00000182183, name=FAM159A, PrEC=4, str=20, LNCaP=1, str=0, DU145=9, str=2
25351 tcgameth site:cg18146843, B=0.14, L=0.43, H=0.36
25351 tcgaexp gene=FAM159A, entrez=348378, pos=chr1:53099066-53135339(+), B=10, L=16, M=11, H=14
25351 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305