DMR 25359 chr1:53935851-53936250 (400bp)

DMR Stats
Positionchr1:53935851-53936250 (View on UCSC)
Width400bp
Genomic Contextintergenic
Nearest GenesDMRTB1 (2692bp away)
ANODEV p-value0.000764039909869
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25359 chr1 53935806 53936095 wgEncodeRegDnaseClusteredV2 91 score:1000, srow:40524
25359 chr1 53936246 53936535 wgEncodeRegDnaseClusteredV2 2 score:213, srow:40525
25359 chr1 53935697 53936216 wgEncodeRegTfbsClusteredV3 SIN3A score:413, expCount:1, expNums:357, expScores:413, srow:144845
25359 chr1 53935712 53936128 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:77, expNums:5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,463,493,595,597,598,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,646,653,654,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,680,682,683,684,685,686,689, expScores:1000,1000,523,251,1000,1000,1000,1000,626,1000,780,1000,1000,346,460,893,1000,983,1000,1000,1000,878,1000,1000,358,213,902,1000,278,465,1000,575,690,544,659,818,1000,1000,491,1000,900,648,779,792,658,382,289,235,1000,948,1000,393,1000,1000,1000,299,1000,1000,816,247,468,527,1000,997,947,856,1000,1000,1000,906,167,348,767,355,1000,853,416, srow:144846
25359 chr1 53935751 53936186 wgEncodeRegTfbsClusteredV3 UBTF score:158, expCount:1, expNums:549, expScores:158, srow:144847
25359 chr1 53935767 53936222 wgEncodeRegTfbsClusteredV3 CCNT2 score:158, expCount:1, expNums:476, expScores:158, srow:144848
25359 chr1 53935770 53936265 wgEncodeRegTfbsClusteredV3 HMGN3 score:188, expCount:1, expNums:501, expScores:188, srow:144849
25359 chr1 53935775 53936070 wgEncodeRegTfbsClusteredV3 RCOR1 score:385, expCount:1, expNums:492, expScores:385, srow:144850
25359 chr1 53935782 53936137 wgEncodeRegTfbsClusteredV3 TAF7 score:380, expCount:1, expNums:158, expScores:380, srow:144851
25359 chr1 53935802 53936111 wgEncodeRegTfbsClusteredV3 EP300 score:223, expCount:1, expNums:145, expScores:223, srow:144852
25359 chr1 53935802 53936125 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:117, expCount:1, expNums:151, expScores:117, srow:144853
25359 chr1 53935805 53936099 wgEncodeRegTfbsClusteredV3 ZNF143 score:729, expCount:2, expNums:361,552, expScores:729,344, srow:144854
25359 chr1 53935806 53936125 wgEncodeRegTfbsClusteredV3 JUND score:219, expCount:1, expNums:350, expScores:219, srow:144855
25359 chr1 53935806 53936181 wgEncodeRegTfbsClusteredV3 TBP score:207, expCount:1, expNums:359, expScores:207, srow:144856
25359 chr1 53935809 53936088 wgEncodeRegTfbsClusteredV3 ZBTB33 score:112, expCount:1, expNums:165, expScores:112, srow:144857
25359 chr1 53935812 53936195 wgEncodeRegTfbsClusteredV3 MYC score:141, expCount:1, expNums:487, expScores:141, srow:144858
25359 chr1 53935817 53936155 wgEncodeRegTfbsClusteredV3 YY1 score:363, expCount:2, expNums:162,164, expScores:363,127, srow:144859
25359 chr1 53935820 53936155 wgEncodeRegTfbsClusteredV3 POLR2A score:251, expCount:1, expNums:256, expScores:251, srow:144860
25359 chr1 53935822 53936051 wgEncodeRegTfbsClusteredV3 REST score:239, expCount:1, expNums:226, expScores:239, srow:144861
25359 chr1 53935825 53936148 wgEncodeRegTfbsClusteredV3 SP1 score:188, expCount:1, expNums:153, expScores:188, srow:144862
25359 chr1 53935828 53936497 wgEncodeRegTfbsClusteredV3 RBBP5 score:209, expCount:1, expNums:8, expScores:209, srow:144863
25359 chr1 53935831 53936090 wgEncodeRegTfbsClusteredV3 TCF12 score:249, expCount:1, expNums:159, expScores:249, srow:144864
25359 chr1 53935832 53936090 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:4, expNums:149,231,355,466, expScores:1000,216,467,281, srow:144865
25359 chr1 53935837 53936106 wgEncodeRegTfbsClusteredV3 SMC3 score:185, expCount:1, expNums:535, expScores:185, srow:144866
25359 chr1 53935845 53936074 wgEncodeRegTfbsClusteredV3 RXRA score:132, expCount:1, expNums:150, expScores:132, srow:144867
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Omics Overlaps

Dmrid Omic Set Data Plot
25359 cellmeth_recounts PrEC: 10, LNCaP: 54, DU145: 3
25359 cellmeth_diffreps_PrECvsLNCaP A=4, B=33, Length=300, Event=Up, log2FC=3.04, padj=1.88996219375202e-05
25359 cellmeth_diffreps_LNCaPvsDU145 A=43.83, B=0.94, Length=420, Event=Down, log2FC=-5.55, padj=1.44157555732346e-10
25359 tcgameth site:cg04873053, B=0.29, L=0.41, H=0.42
25359 tcgameth site:cg10379418, B=0.31, L=0.47, H=0.49
25359 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305