DMR Stats | |
---|---|
Position | chr1:54728751-54728900 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | SSBP3 (0bp away) |
ANODEV p-value | 0.0202203767657 |
Frequencies | Benign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
25367 | SSBP3 | 918 | uc001cxe.4 | chr1 | 54691104 | 54872068 | - | 150 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
25367 | SSBP3 | 918 | uc001cxf.4 | chr1 | 54691104 | 54872068 | - | 150 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
25367 | SSBP3 | 918 | uc001cxg.4 | chr1 | 54691104 | 54872068 | - | 150 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
25367 | chr1 | 54728766 | 54728875 | wgEncodeRegDnaseClusteredV2 | 2 | score:258, srow:41184 |
25367 | chr1 | 54728886 | 54729090 | wgEncodeRegDnaseClusteredV2 | 5 | score:256, srow:41185 |
25367 | chr1 | 54728740 | 54728757 | tfbsConsSites | V$CEBP_C | score:840, zScore:2.42, srow:134224 |
25367 | chr1 | 54728772 | 54728778 | phastConsElements100way | lod=15 | score:262, srow:242527 |
25367 | chr1 | 54728843 | 54728849 | phastConsElements100way | lod=18 | score:280, srow:242528 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
25367 | cellmeth_recounts | PrEC: 7, LNCaP: 11, DU145: 0 | |
25367 | cellmeth_diffreps_PrECvsLNCaP | A=38, B=8, Length=360, Event=Down, log2FC=-2.25, padj=0.000184464890075945 | |
25367 | cellmeth_diffreps_PrECvsDU145 | A=38, B=1, Length=440, Event=Down, log2FC=-5.25, padj=2.56051906907383e-09 | |
25367 | cellexp | id=ENSG00000157216, name=SSBP3, PrEC=1447, str=1454, LNCaP=3409, str=3650, DU145=453, str=255 | |
25367 | tcgaexp | gene=SSBP3, entrez=23648, pos=chr1:54691104-54872068(-), B=3222, L=3454, M=3289, H=3348 | |
25367 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |