DMR 25373 chr1:54941001-54941150 (150bp)

DMR Stats
Positionchr1:54941001-54941150 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesACOT11 (66779bp away)
ANODEV p-value0.0314672911893
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25373 chr1 54940886 54942195 wgEncodeRegDnaseClusteredV2 66 score:1000, srow:41430
25373 chr1 54939741 54941498 wgEncodeRegTfbsClusteredV3 EZH2 score:456, expCount:4, expNums:36,38,40,43, expScores:275,203,295,315, srow:147125
25373 chr1 54941077 54941746 wgEncodeRegTfbsClusteredV3 RBBP5 score:427, expCount:1, expNums:8, expScores:427, srow:147136
25373 chr1 54941086 54941421 wgEncodeRegTfbsClusteredV3 YY1 score:216, expCount:1, expNums:162, expScores:216, srow:147137
25373 chr1 54941090 54941399 wgEncodeRegTfbsClusteredV3 EP300 score:301, expCount:1, expNums:145, expScores:301, srow:147138
25373 chr1 54941094 54941417 wgEncodeRegTfbsClusteredV3 SP1 score:206, expCount:1, expNums:153, expScores:206, srow:147139
25373 chr1 54941098 54941357 wgEncodeRegTfbsClusteredV3 TCF12 score:245, expCount:1, expNums:159, expScores:245, srow:147140
25373 chr1 54941116 54941525 wgEncodeRegTfbsClusteredV3 POLR2A score:243, expCount:1, expNums:146, expScores:243, srow:147141
25373 chr1 54941121 54941126 phastConsElements100way lod=16 score:268, srow:243427
25373 chr1 54940754 54942753 cpgShore — values(x.gr)[overs$srow, ]:2101
  • 10 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25373 cellmeth_recounts PrEC: 17, LNCaP: 59, DU145: 3
25373 cellmeth_diffreps_PrECvsLNCaP A=1, B=122, Length=880, Event=Up, log2FC=6.93, padj=0
25373 cellmeth_diffreps_PrECvsDU145 A=26, B=2, Length=380, Event=Down, log2FC=-3.7, padj=5.03791767068141e-05
25373 cellmeth_diffreps_LNCaPvsDU145 A=54.52, B=2.81, Length=440, Event=Down, log2FC=-4.28, padj=1.90909809157533e-11
25373 tcgameth site:cg21156129, B=0.2, L=0.47, H=0.43
25373 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305