DMR 25379 chr1:55462751-55462900 (150bp)

DMR Stats
Positionchr1:55462751-55462900 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesBSND (1716bp away)
ANODEV p-value0.000266537540365
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25379 chr1 55462346 55463055 wgEncodeRegDnaseClusteredV2 34 score:827, srow:41928
25379 chr1 55462235 55463296 wgEncodeRegTfbsClusteredV3 EZH2 score:507, expCount:5, expNums:19,21,36,38,43, expScores:111,507,270,191,309, srow:148487
25379 chr1 55462725 55463154 wgEncodeRegTfbsClusteredV3 E2F6 score:317, expCount:2, expNums:215,495, expScores:317,201, srow:148488
25379 chr1 55462689 55463010 cpgIsland CpG: 33 length:322, cpgNum:33, gcNum:234, perCpg:20.5, perGc:72.7, obsExp:0.79, srow:1163
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25379 cellmeth_recounts PrEC: 20, LNCaP: 6, DU145: 10
25379 cellmeth_diffreps_PrECvsLNCaP A=36, B=5, Length=380, Event=Down, log2FC=-2.85, padj=1.50889648693038e-05
25379 cellmeth_diffreps_PrECvsDU145 A=34, B=8, Length=340, Event=Down, log2FC=-2.09, padj=0.00134261506706129
25379 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305