DMR 25384 chr1:56993451-56993650 (200bp)

DMR Stats
Positionchr1:56993451-56993650 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesPPAP2B (0bp away)
ANODEV p-value0.00341011489819
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25384 PPAP2B 938 uc001cyj.2 chr1 56960419 57045257 - 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25384 chr1 56993241 56993955 wgEncodeRegDnaseClusteredV2 33 score:522, srow:42777
25384 chr1 56993217 56993532 wgEncodeRegTfbsClusteredV3 EP300 score:508, expCount:1, expNums:263, expScores:508, srow:150921
25384 chr1 56993233 56993908 wgEncodeRegTfbsClusteredV3 KAP1 score:381, expCount:1, expNums:365, expScores:381, srow:150922
25384 chr1 56993382 56993977 wgEncodeRegTfbsClusteredV3 ZNF263 score:564, expCount:1, expNums:368, expScores:564, srow:150923
25384 chr1 56993454 56993463 tfbsConsSites V$LHX3_01 score:893, zScore:1.72, srow:139700
25384 chr1 56993577 56993590 tfbsConsSites V$POU3F2_01 score:808, zScore:2.01, srow:139701
25384 chr1 56993593 56993606 tfbsConsSites V$FOXJ2_02 score:894, zScore:2.68, srow:139702
25384 chr1 56993601 56993624 tfbsConsSites V$BRACH_01 score:678, zScore:1.65, srow:139703
25384 chr1 56993360 56993479 phastConsElements100way lod=516 score:612, srow:250657
25384 chr1 56993492 56993501 phastConsElements100way lod=29 score:327, srow:250658
25384 chr1 56993505 56993531 phastConsElements100way lod=112 score:461, srow:250659
25384 chr1 56993539 56993549 phastConsElements100way lod=38 score:354, srow:250660
25384 chr1 56993557 56993611 phastConsElements100way lod=317 score:564, srow:250661
25384 chr1 56993614 56993635 phastConsElements100way lod=47 score:375, srow:250662
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25384 cellmeth_recounts PrEC: 2, LNCaP: 3, DU145: 0
25384 cellexp id=ENSG00000162407, name=PPAP2B, PrEC=245, str=643, LNCaP=776, str=486, DU145=4614, str=4986
25384 tcgaexp gene=PPAP2B, entrez=8613, pos=chr1:56960419-57045257(-), B=9706, L=5648, M=5241, H=5244
25384 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305