DMR 25396 chr1:61914751-61914950 (200bp)

DMR Stats
Positionchr1:61914751-61914950 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesNFIA (0bp away)
ANODEV p-value0.00324493243889
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25396 NFIA 961 uc001czv.3 chr1 61547980 61928460 + 200 100.0 1.7 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0) 0.0
25396 NFIA 961 uc001czw.3 chr1 61547980 61928460 + 200 100.0 2.27 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0) 0.0
25396 NFIA 961 uc001czx.3 chr1 61869748 61928460 + 200 100.0 0.34 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) 0.0
25396 NFIA 961 uc001czy.3 chr1 61542946 61928460 + 200 100.0 0.2 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0) 0.0
25396 NFIA 961 uc009wae.3 chr1 61872234 61928460 + 200 100.0 0.2 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) 0.0
25396 NFIA 961 uc010oos.2 chr1 61547534 61928460 + 200 100.0 0.34 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (100), E12 (0) 0.0
  • 6 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25396 chr1 61914581 61914915 wgEncodeRegDnaseClusteredV2 39 score:1000, srow:44973
25396 chr1 61914761 61914777 tfbsConsSites V$YY1_01 score:880, zScore:2.05, srow:156358
25396 chr1 61914768 61914781 tfbsConsSites V$CEBPA_01 score:875, zScore:1.65, srow:156359
25396 chr1 61914768 61914781 tfbsConsSites V$CEBPB_02 score:875, zScore:2.23, srow:156360
25396 chr1 61914793 61914803 tfbsConsSites V$AP1FJ_Q2 score:917, zScore:1.89, srow:156361
25396 chr1 61914796 61914805 tfbsConsSites V$HMX1_01 score:814, zScore:1.75, srow:156362
25396 chr1 61914798 61914807 tfbsConsSites V$MYB_Q6 score:939, zScore:2.19, srow:156363
25396 chr1 61914805 61914818 tfbsConsSites V$SRF_Q6 score:813, zScore:1.71, srow:156364
25396 chr1 61914813 61914830 tfbsConsSites V$RFX1_02 score:812, zScore:1.67, srow:156365
25396 chr1 61914889 61914900 tfbsConsSites V$MEIS1_01 score:920, zScore:2.07, srow:156366
25396 chr1 61914911 61914922 tfbsConsSites V$MYCMAX_02 score:876, zScore:1.7, srow:156367
25396 chr1 61914743 61914761 phastConsElements100way lod=82 score:430, srow:270407
25396 chr1 61914764 61914792 phastConsElements100way lod=86 score:434, srow:270408
25396 chr1 61914796 61914807 phastConsElements100way lod=38 score:354, srow:270409
25396 chr1 61914814 61914819 phastConsElements100way lod=23 score:304, srow:270410
25396 chr1 61914829 61914834 phastConsElements100way lod=13 score:247, srow:270411
25396 chr1 61914842 61914848 phastConsElements100way lod=15 score:262, srow:270412
25396 chr1 61914863 61914866 phastConsElements100way lod=15 score:262, srow:270413
25396 chr1 61914883 61914884 phastConsElements100way lod=16 score:268, srow:270414
25396 chr1 61914893 61914896 phastConsElements100way lod=13 score:247, srow:270415
  • 20 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25396 cellmeth_recounts PrEC: 0, LNCaP: 1, DU145: 0
25396 cellexp id=ENSG00000162599, name=NFIA, PrEC=2931, str=1715, LNCaP=4153, str=3816, DU145=1199, str=1071
25396 tcgaexp gene=NFIA, entrez=4774, pos=chr1:61542946-61928460(+), B=5680, L=4809, M=4618, H=3887
25396 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305