DMR 25425 chr1:67600401-67600800 (400bp)
| DMR Stats | |
|---|---|
| Position | chr1:67600401-67600800 (View on UCSC) |
| Width | 400bp |
| Genomic Context | promoter |
| Nearest Genes | C1orf141 (0bp away) |
| ANODEV p-value | 0.00299104506131 |
| Frequencies | Benign: 2.0 (28.57%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25425 | C1orf141 | 1007 | uc001ddm.2 | chr1 | 67557859 | 67600654 | - | 254 | 63.5 | 0.91 | 0 | 100.0 | E1 (10.5), I1 (53), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 25425 | C1orf141 | 1007 | uc001ddn.2 | chr1 | 67557859 | 67600654 | - | 254 | 63.5 | 0.3 | 1 | 100.0 | E1 (10.5), I1 (53), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 25425 | C1orf141 | 1007 | uc031pmv.1 | chr1 | 67557859 | 67600654 | - | 254 | 63.5 | 0.05 | 0 | 100.0 | E1 (10.5), I1 (53), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25425 | chr1 | 67600521 | 67600795 | wgEncodeRegDnaseClusteredV2 | 23 | score:434, srow:47589 |
| 25425 | chr1 | 67600409 | 67600928 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:352, expCount:1, expNums:357, expScores:352, srow:167491 |
| 25425 | chr1 | 67600391 | 67600715 | cpgIsland | CpG: 27 | length:325, cpgNum:27, gcNum:195, perCpg:16.6, perGc:60, obsExp:1.06, srow:1219 |
| 25425 | chr1 | 67600716 | 67602715 | cpgShore | — | values(x.gr)[overs$srow, ]:2231 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25425 | cellmeth_recounts | PrEC: 3, LNCaP: 8, DU145: 3 |  |
| 25425 | cellexp | id=ENSG00000203963, name=C1orf141, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 25425 | tcgaexp | gene=C1orf141, entrez=400757, pos=chr1:67557859-67600654(-), B=0, L=0, M=0, H=0 |  |
| 25425 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |