DMR 25431 chr1:71512201-71512500 (300bp)

DMR Stats
Positionchr1:71512201-71512500 (View on UCSC)
Width300bp
Genomic Contextpromoter
Nearest GenesPTGER3, ZRANB2-AS1 (0bp away)
ANODEV p-value0.00136431182163
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25431 PTGER3 1031 uc001dfg.1 chr1 71318036 71513491 - 300 100.0 0.58 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
25431 PTGER3 1031 uc001dfh.1 chr1 71318036 71513491 - 300 100.0 0.88 1 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
25431 PTGER3 1031 uc001dfi.1 chr1 71318036 71513491 - 300 100.0 6.58 1 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
25431 PTGER3 1031 uc001dfj.1 chr1 71318036 71513491 - 300 100.0 8.55 1 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
25431 PTGER3 1031 uc001dfk.1 chr1 71318036 71513491 - 300 100.0 0.66 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
25431 PTGER3 1031 uc001dfl.1 chr1 71318036 71513491 - 300 100.0 0.66 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0) 0.0
25431 PTGER3 1031 uc001dfm.1 chr1 71349401 71513491 - 300 100.0 3.51 1 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
25431 PTGER3 1031 uc001dfn.3 chr1 71349439 71513491 - 300 100.0 2.19 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
25431 PTGER3 1031 uc001dfo.3 chr1 71418115 71513491 - 300 100.0 0.07 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
25431 PTGER3 1031 uc001dfp.1 chr1 71436464 71513491 - 300 100.0 0.07 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
25431 PTGER3 1031 uc001dfq.3 chr1 71471537 71513491 - 300 100.0 0.07 0 0.0 E1 (45.67), I1 (54.33), E2 (0) 0.0
25431 ZRANB2-AS1 1032 uc001dfr.3 chr1 71512189 71532865 + 300 100.0 0.07 1 100.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0) 0.0
25431 PTGER3 1031 uc009wbm.1 chr1 71327988 71513491 - 300 100.0 0.07 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0) 0.0
25431 PTGER3 1031 uc009wbn.2 chr1 71349439 71513491 - 300 100.0 0.07 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
25431 PTGER3 1031 uc009wbo.3 chr1 71418115 71513491 - 300 100.0 0.09 0 0.0 E1 (45.67), I1 (54.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 15 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25431 chr1 71512006 71512415 wgEncodeRegDnaseClusteredV2 20 score:599, srow:48945
25431 chr1 71512006 71512381 wgEncodeRegTfbsClusteredV3 TBP score:256, expCount:1, expNums:545, expScores:256, srow:172107
25431 chr1 71512050 71512490 wgEncodeRegTfbsClusteredV3 POLR2A score:382, expCount:1, expNums:229, expScores:382, srow:172108
25431 chr1 71512137 71512586 wgEncodeRegTfbsClusteredV3 UBTF score:156, expCount:2, expNums:548,549, expScores:147,156, srow:172109
25431 chr1 71512168 71512551 wgEncodeRegTfbsClusteredV3 MYC score:165, expCount:1, expNums:487, expScores:165, srow:172110
25431 chr1 71512220 71512723 wgEncodeRegTfbsClusteredV3 CHD1 score:157, expCount:1, expNums:23, expScores:157, srow:172111
25431 chr1 71512223 71512391 wgEncodeRegTfbsClusteredV3 E2F6 score:298, expCount:1, expNums:215, expScores:298, srow:172112
25431 chr1 71512337 71513976 wgEncodeRegTfbsClusteredV3 EZH2 score:728, expCount:8, expNums:6,15,17,19,21,36,40,43, expScores:331,492,172,115,454,578,208,364, srow:172113
25431 chr1 71512396 71512413 tfbsConsSites V$CART1_01 score:807, zScore:2.14, srow:175721
25431 chr1 71512441 71512447 tfbsConsSites V$AP2REP_01 score:1000, zScore:2.36, srow:175722
25431 chr1 71512473 71512487 tfbsConsSites V$E2F_01 score:777, zScore:2.06, srow:175723
25431 chr1 71512366 71512366 cosmic COSM1474183 srow:40193
25431 chr1 71512366 71512366 cosmic COSM426669 srow:40194
25431 chr1 71512366 71512366 cosmic COSM426668 srow:40195
25431 chr1 71512366 71512366 cosmic COSM1474182 srow:40196
25431 chr1 71512366 71512366 cosmic COSM426667 srow:40197
25431 chr1 71512400 71512400 cosmic COSM1146375 srow:40198
25431 chr1 71512400 71512400 cosmic COSM682224 srow:40199
25431 chr1 71512400 71512400 cosmic COSM682223 srow:40200
25431 chr1 71512400 71512400 cosmic COSM1146374 srow:40201
25431 chr1 71512400 71512400 cosmic COSM682222 srow:40202
25431 chr1 71512437 71512437 cosmic COSM536156 srow:40203
25431 chr1 71512437 71512437 cosmic COSM536155 srow:40204
25431 chr1 71512437 71512437 cosmic COSM1139273 srow:40205
25431 chr1 71512441 71512441 cosmic COSM1503304 srow:40206
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  • 25 of 51 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25431 cellmeth_recounts PrEC: 8, LNCaP: 60, DU145: 0
25431 cellmeth_diffreps_PrECvsLNCaP A=10, B=133, Length=760, Event=Up, log2FC=3.73, padj=0
25431 cellmeth_diffreps_LNCaPvsDU145 A=143.25, B=6.55, Length=860, Event=Down, log2FC=-4.45, padj=0
25431 cellexp id=ENSG00000050628, name=PTGER3, PrEC=3, str=2, LNCaP=3, str=12, DU145=3, str=1
25431 tcgameth site:cg23823908, B=0.31, L=0.53, H=0.51
25431 tcgaexp gene=PTGER3, entrez=5733, pos=chr1:71318036-71513491(-), B=453, L=280, M=226, H=232
25431 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305