DMR 25440 chr1:78511201-78512550 (1350bp)

DMR Stats
Positionchr1:78511201-78512550 (View on UCSC)
Width1350bp
Genomic Contextpromoter
Nearest GenesGIPC2 (0bp away)
ANODEV p-value2.64833056093e-08
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25440 GIPC2 1066 uc001dik.3 chr1 78511589 78603112 + 962 71.26 0.24 0 65.78 E1 (31.85), I1 (39.48), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25440 chr1 78510326 78512695 wgEncodeRegDnaseClusteredV2 80 score:1000, srow:50543
25440 chr1 78511121 78511736 wgEncodeRegTfbsClusteredV3 CHD1 score:224, expCount:1, expNums:4, expScores:224, srow:176554
25440 chr1 78511367 78512591 wgEncodeRegTfbsClusteredV3 EZH2 score:361, expCount:5, expNums:6,15,36,38,40, expScores:269,263,221,243,250, srow:176555
25440 chr1 78511447 78511902 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:136, expCount:1, expNums:195, expScores:136, srow:176556
25440 chr1 78511469 78512524 wgEncodeRegTfbsClusteredV3 SUZ12 score:234, expCount:1, expNums:578, expScores:154, srow:176557
25440 chr1 78511483 78511818 wgEncodeRegTfbsClusteredV3 SP1 score:143, expCount:1, expNums:196, expScores:143, srow:176558
25440 chr1 78511512 78511835 wgEncodeRegTfbsClusteredV3 EP300 score:185, expCount:1, expNums:190, expScores:185, srow:176559
25440 chr1 78511526 78511861 wgEncodeRegTfbsClusteredV3 YY1 score:293, expCount:2, expNums:162,203, expScores:244,293, srow:176560
25440 chr1 78511541 78512299 wgEncodeRegTfbsClusteredV3 POLR2A score:836, expCount:8, expNums:146,147,191,192,206,445,446,610, expScores:253,433,389,836,198,324,318,139, srow:176561
25440 chr1 78511547 78511846 wgEncodeRegTfbsClusteredV3 RXRA score:160, expCount:1, expNums:194, expScores:160, srow:176562
25440 chr1 78511547 78511842 wgEncodeRegTfbsClusteredV3 HNF4A score:878, expCount:2, expNums:182,432, expScores:878,399, srow:176563
25440 chr1 78511558 78511897 wgEncodeRegTfbsClusteredV3 HDAC2 score:267, expCount:1, expNums:181, expScores:267, srow:176564
25440 chr1 78511581 78512001 wgEncodeRegTfbsClusteredV3 TAF1 score:666, expCount:2, expNums:157,199, expScores:218,666, srow:176565
25440 chr1 78511592 78511867 wgEncodeRegTfbsClusteredV3 CEBPD score:160, expCount:1, expNums:173, expScores:160, srow:176566
25440 chr1 78511593 78511730 wgEncodeRegTfbsClusteredV3 ELF1 score:460, expCount:1, expNums:175, expScores:460, srow:176567
25440 chr1 78511598 78511790 wgEncodeRegTfbsClusteredV3 HNF4G score:738, expCount:1, expNums:183, expScores:738, srow:176568
25440 chr1 78511791 78512460 wgEncodeRegTfbsClusteredV3 RBBP5 score:244, expCount:1, expNums:8, expScores:244, srow:176569
25440 chr1 78511896 78512271 wgEncodeRegTfbsClusteredV3 TBP score:185, expCount:1, expNums:359, expScores:185, srow:176570
25440 chr1 78511925 78512248 wgEncodeRegTfbsClusteredV3 BACH1 score:169, expCount:1, expNums:341, expScores:169, srow:176571
25440 chr1 78511648 78511661 tfbsConsSites V$ELK1_02 score:898, zScore:2.24, srow:186054
25440 chr1 78511651 78511660 tfbsConsSites V$NRF2_01 score:890, zScore:1.72, srow:186055
25440 chr1 78511653 78511660 tfbsConsSites V$STAT3_02 score:985, zScore:1.64, srow:186056
25440 chr1 78511680 78511692 tfbsConsSites V$AREB6_01 score:888, zScore:1.81, srow:186057
25440 chr1 78511914 78511925 tfbsConsSites V$MYOD_01 score:928, zScore:2.36, srow:186058
25440 chr1 78511914 78511925 tfbsConsSites V$LMO2COM_01 score:924, zScore:1.78, srow:186059
  • Page 1 of 3
  • 25 of 63 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25440 cellmeth_recounts PrEC: 18, LNCaP: 256, DU145: 49
25440 cellmeth_diffreps_PrECvsLNCaP A=6, B=181, Length=1160, Event=Up, log2FC=4.91, padj=0
25440 cellmeth_diffreps_LNCaPvsDU145 A=213.81, B=30.87, Length=1240, Event=Down, log2FC=-2.79, padj=0
25440 cellexp id=ENSG00000137960, name=GIPC2, PrEC=159, str=114, LNCaP=2, str=2, DU145=3, str=7
25440 tcgameth site:cg00347563, B=0.19, L=0.49, H=0.54
25440 tcgameth site:cg01074657, B=0.46, L=0.74, H=0.65
25440 tcgameth site:cg04912843, B=0.17, L=0.48, H=0.47
25440 tcgameth site:cg09107315, B=0.38, L=0.47, H=0.47
25440 tcgameth site:cg09662920, B=0.5, L=0.61, H=0.56
25440 tcgameth site:cg09826056, B=0.58, L=0.66, H=0.62
25440 tcgameth site:cg19766489, B=0.71, L=0.78, H=0.75
25440 tcgameth site:cg20785560, B=0.78, L=0.82, H=0.79
25440 tcgameth site:cg24719487, B=0.05, L=0.27, H=0.3
25440 tcgameth site:cg25288420, B=0.17, L=0.45, H=0.49
25440 tcgaexp gene=GIPC2, entrez=54810, pos=chr1:78511589-78603112(+), B=216, L=129, M=93, H=83
25440 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305