DMR 25444 chr1:85463851-85464350 (500bp)

DMR Stats
Positionchr1:85463851-85464350 (View on UCSC)
Width500bp
Genomic Contextintergenic
Nearest GenesMCOLN2 (1054bp away)
ANODEV p-value6.90852584434e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25444 chr1 85463446 85464335 wgEncodeRegDnaseClusteredV2 63 score:571, srow:52464
25444 chr1 85463051 85464412 wgEncodeRegTfbsClusteredV3 EZH2 score:996, expCount:8, expNums:6,15,19,21,36,38,40,43, expScores:450,266,169,528,210,212,364,316, srow:181824
25444 chr1 85463270 85464096 wgEncodeRegTfbsClusteredV3 SUZ12 score:233, expCount:1, expNums:578, expScores:143, srow:181827
25444 chr1 85463584 85463983 wgEncodeRegTfbsClusteredV3 WRNIP1 score:114, expCount:1, expNums:320, expScores:114, srow:181829
25444 chr1 85463615 85464254 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:119, expCount:1, expNums:250, expScores:116, srow:181830
25444 chr1 85463630 85464225 wgEncodeRegTfbsClusteredV3 NFATC1 score:318, expCount:1, expNums:96, expScores:318, srow:181831
25444 chr1 85463662 85464257 wgEncodeRegTfbsClusteredV3 TCF7L2 score:490, expCount:1, expNums:581, expScores:490, srow:181832
25444 chr1 85463723 85464392 wgEncodeRegTfbsClusteredV3 RBBP5 score:269, expCount:1, expNums:8, expScores:269, srow:181833
25444 chr1 85463885 85464167 cpgIsland CpG: 32 length:283, cpgNum:32, gcNum:181, perCpg:22.6, perGc:64, obsExp:1.12, srow:1275
25444 chr1 85463436 85463884 cpgShore — values(x.gr)[overs$srow, ]:2334
25444 chr1 85464168 85466167 cpgShore — values(x.gr)[overs$srow, ]:2335
  • 11 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25444 cellmeth_recounts PrEC: 0, LNCaP: 64, DU145: 4
25444 cellmeth_diffreps_PrECvsLNCaP A=0, B=51, Length=600, Event=Up, log2FC=Inf, padj=0
25444 cellmeth_diffreps_LNCaPvsDU145 A=54.52, B=2.81, Length=540, Event=Down, log2FC=-4.28, padj=1.90909809157533e-11
25444 tcgameth site:cg06402325, B=0.13, L=0.36, H=0.38
25444 tcgameth site:cg07478468, B=0.04, L=0.35, H=0.36
25444 tcgameth site:cg23106912, B=0.2, L=0.48, H=0.48
25444 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305