DMR 25486 chr1:106623501-106623850 (350bp)

DMR Stats
Positionchr1:106623501-106623850 (View on UCSC)
Width350bp
Genomic Contextintergenic
Nearest GenesBC043293 (461943bp away)
ANODEV p-value0.0131744136964
FrequenciesBenign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25486 chr1 106623666 106623875 wgEncodeRegDnaseClusteredV2 2 score:138, srow:59528
25486 chr1 106623620 106623819 wgEncodeRegTfbsClusteredV3 CTCF score:197, expCount:1, expNums:597, expScores:197, srow:207121
25486 chr1 106623595 106623617 phastConsElements100way lod=39 score:356, srow:437510
25486 chr1 106623689 106623758 phastConsElements100way lod=115 score:463, srow:437511
25486 chr1 106623793 106623797 phastConsElements100way lod=13 score:247, srow:437512
25486 chr1 106623808 106623992 phastConsElements100way lod=242 score:537, srow:437513
25486 chr1 106623394 106623854 cpgIsland CpG: 37 length:461, cpgNum:37, gcNum:296, perCpg:16.1, perGc:64.2, obsExp:0.78, srow:1372
  • 7 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25486 cellmeth_recounts PrEC: 2, LNCaP: 19, DU145: 18
25486 cellexp id=ENSG00000230932, name=RP5-947P14.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
25486 cellexp id=ENSG00000237480, name=RP5-947P14.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
25486 tcgameth site:cg03009158, B=0.27, L=0.35, H=0.38
25486 tcgameth site:cg10779492, B=0.3, L=0.52, H=0.56
25486 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305