DMR 25494 chr1:109794251-109794600 (350bp)
| DMR Stats | |
|---|---|
| Position | chr1:109794251-109794600 (View on UCSC) |
| Width | 350bp |
| Genomic Context | exon |
| Nearest Genes | CELSR2 (0bp away) |
| ANODEV p-value | 0.0218376577532 |
| Frequencies | Benign: 2.0 (28.57%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25494 | CELSR2 | 1273 | uc001dxa.4 | chr1 | 109792641 | 109818378 | + | 350 | 100.0 | 2.85 | 0 | 0.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25494 | chr1 | 109794166 | 109794575 | wgEncodeRegDnaseClusteredV2 | 6 | score:317, srow:60724 |
| 25494 | chr1 | 109794403 | 109795103 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:270, expCount:2, expNums:632,634, expScores:270,224, srow:211807 |
| 25494 | chr1 | 109794352 | 109794364 | tfbsConsSites | V$MZF1_02 | score:885, zScore:2.19, srow:257634 |
| 25494 | chr1 | 109794378 | 109794396 | tfbsConsSites | V$SEF1_C | score:781, zScore:2.87, srow:257635 |
| 25494 | chr1 | 109794398 | 109794418 | tfbsConsSites | V$PAX6_01 | score:772, zScore:2.02, srow:257636 |
| 25494 | chr1 | 109794511 | 109794524 | tfbsConsSites | V$FOXO1_02 | score:846, zScore:2.4, srow:257637 |
| 25494 | chr1 | 109794514 | 109794524 | tfbsConsSites | V$FOXO4_01 | score:922, zScore:1.89, srow:257638 |
| 25494 | chr1 | 109794538 | 109794553 | tfbsConsSites | V$FREAC4_01 | score:811, zScore:1.91, srow:257639 |
| 25494 | chr1 | 109794561 | 109794582 | tfbsConsSites | V$HEN1_02 | score:774, zScore:2, srow:257640 |
| 25494 | chr1 | 109794584 | 109794594 | tfbsConsSites | V$SREBP1_02 | score:843, zScore:2.19, srow:257641 |
| 25494 | chr1 | 109794592 | 109794602 | tfbsConsSites | V$AP1FJ_Q2 | score:916, zScore:1.87, srow:257642 |
| 25494 | chr1 | 109794410 | 109794410 | cosmic | COSM382968 | srow:51740 |
| 25494 | chr1 | 109794534 | 109794534 | cosmic | COSM893455 | srow:51741 |
| 25494 | chr1 | 109794241 | 109794257 | phastConsElements100way | lod=182 | score:509, srow:449966 |
| 25494 | chr1 | 109794260 | 109794269 | phastConsElements100way | lod=88 | score:437, srow:449967 |
| 25494 | chr1 | 109794271 | 109794275 | phastConsElements100way | lod=50 | score:381, srow:449968 |
| 25494 | chr1 | 109794277 | 109794278 | phastConsElements100way | lod=32 | score:337, srow:449969 |
| 25494 | chr1 | 109794280 | 109794281 | phastConsElements100way | lod=23 | score:304, srow:449970 |
| 25494 | chr1 | 109794283 | 109794287 | phastConsElements100way | lod=61 | score:400, srow:449971 |
| 25494 | chr1 | 109794289 | 109794290 | phastConsElements100way | lod=20 | score:290, srow:449972 |
| 25494 | chr1 | 109794292 | 109794293 | phastConsElements100way | lod=40 | score:359, srow:449973 |
| 25494 | chr1 | 109794295 | 109794296 | phastConsElements100way | lod=29 | score:327, srow:449974 |
| 25494 | chr1 | 109794298 | 109794302 | phastConsElements100way | lod=52 | score:385, srow:449975 |
| 25494 | chr1 | 109794304 | 109794305 | phastConsElements100way | lod=45 | score:370, srow:449976 |
| 25494 | chr1 | 109794307 | 109794308 | phastConsElements100way | lod=38 | score:354, srow:449977 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25494 | cellmeth_recounts | PrEC: 51, LNCaP: 291, DU145: 4 |  |
| 25494 | cellmeth_diffreps_PrECvsLNCaP | A=683, B=1738, Length=2560, Event=Up, log2FC=1.35, padj=0 |  |
| 25494 | cellmeth_diffreps_PrECvsDU145 | A=1044, B=48, Length=2660, Event=Down, log2FC=-4.44, padj=0 |  |
| 25494 | cellmeth_diffreps_LNCaPvsDU145 | A=2309.14, B=47.71, Length=3600, Event=Down, log2FC=-5.6, padj=0 |  |
| 25494 | cellexp | id=ENSG00000143126, name=CELSR2, PrEC=7843, str=4793, LNCaP=4198, str=3696, DU145=2892, str=1482 |  |
| 25494 | tcgameth | site:cg07152001, B=0.93, L=0.93, H=0.93 |  |
| 25494 | tcgaexp | gene=CELSR2, entrez=1952, pos=chr1:109792641-109818378(+), B=2940, L=1660, M=1697, H=1409 |  |
| 25494 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |