DMR 25501 chr1:110610501-110613350 (2850bp)
| DMR Stats | |
|---|---|
| Position | chr1:110610501-110613350 (View on UCSC) |
| Width | 2850bp |
| Genomic Context | promoter |
| Nearest Genes | ALX3 (0bp away) |
| ANODEV p-value | 0.000220120265325 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25501 | ALX3 | 1296 | uc001dzb.3 | chr1 | 110602997 | 110613322 | - | 2822 | 99.02 | 0.02 | 0 | 18.53 | E1 (12.81), I1 (86.21), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25501 | chr1 | 110609886 | 110612715 | wgEncodeRegDnaseClusteredV2 | 66 | score:1000, srow:61513 |
| 25501 | chr1 | 110612786 | 110613155 | wgEncodeRegDnaseClusteredV2 | 12 | score:669, srow:61514 |
| 25501 | chr1 | 110613166 | 110613955 | wgEncodeRegDnaseClusteredV2 | 32 | score:912, srow:61515 |
| 25501 | chr1 | 110610012 | 110614286 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:1000, expCount:9, expNums:3,6,15,19,21,36,38,40,43, expScores:288,349,252,150,498,255,249,347,420, srow:215398 |
| 25501 | chr1 | 110610692 | 110611221 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:303, expCount:2, expNums:358,578, expScores:143,303, srow:215399 |
| 25501 | chr1 | 110610753 | 110611352 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:187, expCount:1, expNums:348, expScores:187, srow:215400 |
| 25501 | chr1 | 110610900 | 110611243 | wgEncodeRegTfbsClusteredV3 | GABPA | score:195, expCount:1, expNums:140, expScores:195, srow:215401 |
| 25501 | chr1 | 110611066 | 110611325 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:131, expCount:1, expNums:159, expScores:131, srow:215402 |
| 25501 | chr1 | 110611092 | 110611735 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:265, expCount:2, expNums:22,41, expScores:265,174, srow:215403 |
| 25501 | chr1 | 110611397 | 110611695 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:292, expCount:2, expNums:100,129, expScores:292,221, srow:215404 |
| 25501 | chr1 | 110611548 | 110612254 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:210, expCount:2, expNums:358,578, expScores:210,134, srow:215405 |
| 25501 | chr1 | 110612351 | 110612765 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:285, expCount:2, expNums:358,578, expScores:177,285, srow:215406 |
| 25501 | chr1 | 110613302 | 110613577 | wgEncodeRegTfbsClusteredV3 | USF2 | score:168, expCount:1, expNums:360, expScores:168, srow:215407 |
| 25501 | chr1 | 110612998 | 110612998 | cosmic | COSM1600518 | srow:52726 |
| 25501 | chr1 | 110610797 | 110610798 | phastConsElements100way | lod=15 | score:262, srow:456175 |
| 25501 | chr1 | 110610830 | 110610839 | phastConsElements100way | lod=23 | score:304, srow:456176 |
| 25501 | chr1 | 110610843 | 110610848 | phastConsElements100way | lod=25 | score:312, srow:456177 |
| 25501 | chr1 | 110610852 | 110610870 | phastConsElements100way | lod=30 | score:330, srow:456178 |
| 25501 | chr1 | 110611278 | 110611282 | phastConsElements100way | lod=18 | score:280, srow:456179 |
| 25501 | chr1 | 110611285 | 110611290 | phastConsElements100way | lod=14 | score:255, srow:456180 |
| 25501 | chr1 | 110611462 | 110611469 | phastConsElements100way | lod=16 | score:268, srow:456181 |
| 25501 | chr1 | 110611668 | 110611676 | phastConsElements100way | lod=43 | score:366, srow:456182 |
| 25501 | chr1 | 110611701 | 110611857 | phastConsElements100way | lod=566 | score:621, srow:456183 |
| 25501 | chr1 | 110611860 | 110611864 | phastConsElements100way | lod=15 | score:262, srow:456184 |
| 25501 | chr1 | 110611872 | 110611878 | phastConsElements100way | lod=19 | score:285, srow:456185 |
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- 25 of 46 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25501 | cellmeth_recounts | PrEC: 281, LNCaP: 6744, DU145: 119 |  |
| 25501 | cellmeth_diffreps_PrECvsLNCaP | A=470, B=5482, Length=3480, Event=Up, log2FC=3.54, padj=0 |  |
| 25501 | cellmeth_diffreps_PrECvsDU145 | A=196, B=42, Length=1120, Event=Down, log2FC=-2.22, padj=0 |  |
| 25501 | cellmeth_diffreps_PrECvsDU145 | A=0, B=13, Length=200, Event=Up, log2FC=Inf, padj=0.000941091010072773 |  |
| 25501 | cellmeth_diffreps_PrECvsDU145 | A=267, B=28, Length=1320, Event=Down, log2FC=-3.25, padj=0 |  |
| 25501 | cellmeth_diffreps_LNCaPvsDU145 | A=5904.34, B=98.22, Length=3900, Event=Down, log2FC=-5.91, padj=0 |  |
| 25501 | cellexp | id=ENSG00000143093, name=STRIP1, PrEC=2736, str=3148, LNCaP=2079, str=1860, DU145=1890, str=1952 |  |
| 25501 | cellexp | id=ENSG00000156150, name=ALX3, PrEC=0, str=0, LNCaP=1, str=0, DU145=3, str=1 |  |
| 25501 | tcgameth | site:cg05622465, B=0.16, L=0.49, H=0.5 |  |
| 25501 | tcgameth | site:cg06809252, B=0.55, L=0.83, H=0.81 |  |
| 25501 | tcgameth | site:cg10023272, B=0.13, L=0.4, H=0.4 |  |
| 25501 | tcgameth | site:cg11071207, B=0.26, L=0.51, H=0.53 |  |
| 25501 | tcgameth | site:cg18786873, B=0.19, L=0.54, H=0.56 |  |
| 25501 | tcgameth | site:cg23871640, B=0.27, L=0.47, H=0.48 |  |
| 25501 | tcgaexp | gene=ALX3, entrez=257, pos=chr1:110602997-110613322(-), B=54, L=57, M=63, H=57 |  |
| 25501 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |