DMR 25506 chr1:110754101-110754850 (750bp)

DMR Stats
Positionchr1:110754101-110754850 (View on UCSC)
Width750bp
Genomic Contextexon
Nearest GenesKCNC4 (0bp away)
ANODEV p-value0.000977894079298
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25506 KCNC4 1300 uc001dzf.3 chr1 110753336 110766705 + 750 100.0 0.04 0 0.0 E1 (93.2), I1 (6.93), E2 (0) 0.0
25506 KCNC4 1300 uc001dzg.3 chr1 110753336 110776674 + 750 100.0 0.01 0 0.0 E1 (93.2), I1 (6.93), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
25506 KCNC4 1300 uc001dzh.3 chr1 110753336 110776674 + 750 100.0 0.01 0 0.0 E1 (93.2), I1 (6.93), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
25506 KCNC4 1300 uc001dzi.3 chr1 110753336 110776674 + 750 100.0 0.01 1 0.0 E1 (93.2), I1 (6.93), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
25506 KCNC4 1300 uc009wfr.3 chr1 110753336 110769166 + 750 100.0 0.02 0 0.0 E1 (93.2), I1 (6.93), E2 (0), I2 (0), E3 (0) 0.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25506 chr1 110753026 110754415 wgEncodeRegDnaseClusteredV2 92 score:877, srow:61660
25506 chr1 110754506 110754595 wgEncodeRegDnaseClusteredV2 2 score:334, srow:61661
25506 chr1 110754606 110755695 wgEncodeRegDnaseClusteredV2 47 score:586, srow:61662
25506 chr1 110753409 110755338 wgEncodeRegTfbsClusteredV3 EZH2 score:983, expCount:7, expNums:3,6,21,25,36,38,43, expScores:194,308,360,246,255,248,268, srow:215708
25506 chr1 110753753 110754416 wgEncodeRegTfbsClusteredV3 ZNF263 score:624, expCount:1, expNums:368, expScores:293, srow:215711
25506 chr1 110754102 110754345 wgEncodeRegTfbsClusteredV3 EGR1 score:147, expCount:1, expNums:216, expScores:147, srow:215712
25506 chr1 110754103 110754432 wgEncodeRegTfbsClusteredV3 BHLHE40 score:393, expCount:1, expNums:284, expScores:393, srow:215713
25506 chr1 110754126 110754395 wgEncodeRegTfbsClusteredV3 CTCF score:111, expCount:2, expNums:597,636, expScores:111,109, srow:215714
25506 chr1 110754134 110754477 wgEncodeRegTfbsClusteredV3 YY1 score:165, expCount:1, expNums:119, expScores:165, srow:215715
25506 chr1 110754166 110754445 wgEncodeRegTfbsClusteredV3 PAX5 score:132, expCount:1, expNums:129, expScores:132, srow:215716
25506 chr1 110754578 110755101 wgEncodeRegTfbsClusteredV3 CTCF score:199, expCount:5, expNums:5,20,137,597,673, expScores:141,132,199,167,196, srow:215717
25506 chr1 110754849 110755444 wgEncodeRegTfbsClusteredV3 ZNF263 score:240, expCount:1, expNums:368, expScores:240, srow:215718
25506 chr1 110754203 110754205 cosmic COSM32958 srow:52827
25506 chr1 110754204 110754204 cosmic COSM893636 srow:52828
25506 chr1 110754218 110754218 cosmic COSM1138482 srow:52829
25506 chr1 110754218 110754218 cosmic COSM527465 srow:52830
25506 chr1 110754241 110754241 cosmic COSM1294703 srow:52831
25506 chr1 110754241 110754241 cosmic COSM1294702 srow:52832
25506 chr1 110754258 110754258 cosmic COSM893637 srow:52833
25506 chr1 110754265 110754265 cosmic COSM1583253 srow:52834
25506 chr1 110754265 110754265 cosmic COSM893638 srow:52835
25506 chr1 110754422 110754422 cosmic COSM394701 srow:52836
25506 chr1 110754454 110754454 cosmic COSM354033 srow:52837
25506 chr1 110754465 110754465 cosmic COSM369736 srow:52838
25506 chr1 110754500 110754500 cosmic COSM1560119 srow:52839
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  • 25 of 73 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25506 cellmeth_recounts PrEC: 43, LNCaP: 995, DU145: 35
25506 cellmeth_diffreps_PrECvsLNCaP A=68, B=859, Length=1200, Event=Up, log2FC=3.66, padj=0
25506 cellmeth_diffreps_PrECvsDU145 A=53, B=10, Length=380, Event=Down, log2FC=-2.41, padj=1.19272739684993e-06
25506 cellmeth_diffreps_LNCaPvsDU145 A=918.31, B=32.74, Length=1180, Event=Down, log2FC=-4.81, padj=0
25506 cellexp id=ENSG00000116396, name=KCNC4, PrEC=669, str=912, LNCaP=7, str=2, DU145=506, str=311
25506 tcgameth site:cg05675373, B=0.24, L=0.47, H=0.48
25506 tcgameth site:cg13902210, B=0.28, L=0.48, H=0.5
25506 tcgaexp gene=KCNC4, entrez=3749, pos=chr1:110753336-110776674(+), B=430, L=359, M=318, H=420
25506 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305