DMR 25542 chr1:119525951-119528100 (2150bp)

DMR Stats
Positionchr1:119525951-119528100 (View on UCSC)
Width2150bp
Genomic Contextintron
Nearest GenesTBX15 (0bp away)
ANODEV p-value2.34929756469e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25542 TBX15 1410 uc001ehl.1 chr1 119425666 119532179 - 2150 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25542 chr1 119525566 119526035 wgEncodeRegDnaseClusteredV2 12 score:300, srow:66600
25542 chr1 119526066 119526795 wgEncodeRegDnaseClusteredV2 27 score:1000, srow:66601
25542 chr1 119526806 119528235 wgEncodeRegDnaseClusteredV2 68 score:1000, srow:66602
25542 chr1 119525342 119528886 wgEncodeRegTfbsClusteredV3 EZH2 score:861, expCount:3, expNums:6,21,36, expScores:413,530,240, srow:233369
25542 chr1 119526200 119526509 wgEncodeRegTfbsClusteredV3 SUZ12 score:132, expCount:1, expNums:358, expScores:132, srow:233371
25542 chr1 119526267 119526636 wgEncodeRegTfbsClusteredV3 POLR2A score:349, expCount:2, expNums:336,637, expScores:349,347, srow:233372
25542 chr1 119526620 119527215 wgEncodeRegTfbsClusteredV3 E2F6 score:181, expCount:2, expNums:215,495, expScores:181,134, srow:233373
25542 chr1 119526667 119527195 wgEncodeRegTfbsClusteredV3 MAX score:291, expCount:1, expNums:352, expScores:216, srow:233374
25542 chr1 119526860 119527459 wgEncodeRegTfbsClusteredV3 CTBP2 score:248, expCount:1, expNums:348, expScores:248, srow:233375
25542 chr1 119526960 119527203 wgEncodeRegTfbsClusteredV3 RAD21 score:714, expCount:2, expNums:149,355, expScores:714,363, srow:233376
25542 chr1 119526972 119527347 wgEncodeRegTfbsClusteredV3 TBP score:232, expCount:1, expNums:359, expScores:232, srow:233377
25542 chr1 119526975 119527265 wgEncodeRegTfbsClusteredV3 CTCF score:438, expCount:10, expNums:5,37,137,597,605,606,609,636,652,662, expScores:153,148,184,204,309,438,167,136,205,201, srow:233378
25542 chr1 119527004 119527263 wgEncodeRegTfbsClusteredV3 TCF12 score:125, expCount:1, expNums:159, expScores:125, srow:233379
25542 chr1 119527059 119527334 wgEncodeRegTfbsClusteredV3 EGR1 score:140, expCount:1, expNums:138, expScores:140, srow:233380
25542 chr1 119527423 119527547 wgEncodeRegTfbsClusteredV3 POLR2A score:326, expCount:1, expNums:336, expScores:326, srow:233381
25542 chr1 119526612 119526619 tfbsConsSites V$CREBP1CJUN_01 score:894, zScore:1.65, srow:284305
25542 chr1 119526643 119526658 tfbsConsSites V$FREAC3_01 score:836, zScore:2.35, srow:284306
25542 chr1 119526646 119526663 tfbsConsSites V$FOXJ2_01 score:895, zScore:1.95, srow:284307
25542 chr1 119526650 119526661 tfbsConsSites V$FOXD3_01 score:930, zScore:2.5, srow:284308
25542 chr1 119526650 119526661 tfbsConsSites V$HFH1_01 score:899, zScore:2.33, srow:284309
25542 chr1 119526672 119526681 tfbsConsSites V$LHX3_01 score:918, zScore:2.05, srow:284310
25542 chr1 119526872 119526883 tfbsConsSites V$PAX4_03 score:926, zScore:2.01, srow:284311
25542 chr1 119526872 119526899 tfbsConsSites V$PAX5_02 score:764, zScore:1.7, srow:284312
25542 chr1 119526952 119526963 tfbsConsSites V$NFKB_C score:850, zScore:1.88, srow:284313
25542 chr1 119526953 119526962 tfbsConsSites V$NFKAPPAB_01 score:899, zScore:1.68, srow:284314
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  • 25 of 45 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25542 cellmeth_recounts PrEC: 17, LNCaP: 792, DU145: 67
25542 cellmeth_diffreps_PrECvsLNCaP A=24, B=629, Length=2300, Event=Up, log2FC=4.71, padj=0
25542 cellmeth_diffreps_PrECvsDU145 A=0, B=13, Length=200, Event=Up, log2FC=Inf, padj=0.000941091010072773
25542 cellmeth_diffreps_LNCaPvsDU145 A=633.94, B=37.42, Length=1920, Event=Down, log2FC=-4.08, padj=0
25542 cellmeth_diffreps_LNCaPvsDU145 A=23.52, B=2.81, Length=280, Event=Down, log2FC=-3.07, padj=0.00211619211302172
25542 cellexp id=ENSG00000092607, name=TBX15, PrEC=1, str=5, LNCaP=74, str=130, DU145=4, str=10
25542 tcgameth site:cg02829688, B=0.29, L=0.52, H=0.55
25542 tcgameth site:cg04707332, B=0.53, L=0.75, H=0.74
25542 tcgameth site:cg05172122, B=0.4, L=0.61, H=0.61
25542 tcgameth site:cg16990168, B=0.37, L=0.63, H=0.65
25542 tcgameth site:cg24144440, B=0.31, L=0.5, H=0.52
25542 tcgameth site:cg26104752, B=0.11, L=0.34, H=0.36
25542 tcgaexp gene=TBX15, entrez=6913, pos=chr1:119425666-119532179(-), B=87, L=34, M=67, H=58
25542 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305