DMR 25546 chr1:119531551-119532200 (650bp)
| DMR Stats | |
|---|---|
| Position | chr1:119531551-119532200 (View on UCSC) |
| Width | 650bp |
| Genomic Context | promoter |
| Nearest Genes | TBX15 (0bp away) |
| ANODEV p-value | 0.000719343046231 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25546 | TBX15 | 1410 | uc001ehl.1 | chr1 | 119425666 | 119532179 | - | 629 | 96.77 | 0.03 | 0 | 80.15 | E1 (31.08), I1 (65.69), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25546 | chr1 | 119530861 | 119531835 | wgEncodeRegDnaseClusteredV2 | 40 | score:1000, srow:66605 |
| 25546 | chr1 | 119531946 | 119531995 | wgEncodeRegDnaseClusteredV2 | 2 | score:241, srow:66606 |
| 25546 | chr1 | 119532021 | 119532355 | wgEncodeRegDnaseClusteredV2 | 29 | score:601, srow:66607 |
| 25546 | chr1 | 119528887 | 119532406 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:646, expCount:8, expNums:3,6,15,21,25,36,40,43, expScores:139,429,442,380,214,223,279,274, srow:233383 |
| 25546 | chr1 | 119531748 | 119531754 | phastConsElements100way | lod=19 | score:285, srow:495155 |
| 25546 | chr1 | 119532088 | 119532091 | phastConsElements100way | lod=19 | score:285, srow:495156 |
| 25546 | chr1 | 119531992 | 119532196 | cpgIsland | CpG: 19 | length:205, cpgNum:19, gcNum:125, perCpg:18.5, perGc:61, obsExp:1, srow:1491 |
| 25546 | chr1 | 119530713 | 119531991 | cpgShore | — | values(x.gr)[overs$srow, ]:2743 |
| 25546 | chr1 | 119532197 | 119535666 | cpgShore | — | values(x.gr)[overs$srow, ]:2744 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25546 | cellmeth_recounts | PrEC: 4, LNCaP: 74, DU145: 18 |  |
| 25546 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=53, Length=680, Event=Up, log2FC=3.73, padj=1.39023887376442e-10 |  |
| 25546 | cellmeth_diffreps_LNCaPvsDU145 | A=35.28, B=6.55, Length=360, Event=Down, log2FC=-2.43, padj=0.000541212937974265 |  |
| 25546 | cellmeth_diffreps_LNCaPvsDU145 | A=26.73, B=2.81, Length=340, Event=Down, log2FC=-3.25, padj=0.000400564773756258 |  |
| 25546 | cellexp | id=ENSG00000092607, name=TBX15, PrEC=1, str=5, LNCaP=74, str=130, DU145=4, str=10 |  |
| 25546 | tcgameth | site:cg03760839, B=0.5, L=0.7, H=0.71 |  |
| 25546 | tcgameth | site:cg05940231, B=0.29, L=0.55, H=0.57 |  |
| 25546 | tcgameth | site:cg07892597, B=0.44, L=0.63, H=0.64 |  |
| 25546 | tcgameth | site:cg10703826, B=0.25, L=0.59, H=0.63 |  |
| 25546 | tcgameth | site:cg14565725, B=0.33, L=0.66, H=0.64 |  |
| 25546 | tcgameth | site:cg21295088, B=0.1, L=0.22, H=0.26 |  |
| 25546 | tcgameth | site:cg24842086, B=0.28, L=0.48, H=0.51 |  |
| 25546 | tcgameth | site:cg24884142, B=0.28, L=0.61, H=0.57 |  |
| 25546 | tcgameth | site:cg25340966, B=0.23, L=0.58, H=0.58 |  |
| 25546 | tcgaexp | gene=TBX15, entrez=6913, pos=chr1:119425666-119532179(-), B=87, L=34, M=67, H=58 |  |
| 25546 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |