DMR 25550 chr1:119543001-119543450 (450bp)

DMR Stats
Positionchr1:119543001-119543450 (View on UCSC)
Width450bp
Genomic Contextintergenic
Nearest GenesTBX15 (10821bp away)
ANODEV p-value1.21597872346e-08
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25550 chr1 119542966 119543550 wgEncodeRegDnaseClusteredV2 34 score:617, srow:66624
25550 chr1 119542687 119544746 wgEncodeRegTfbsClusteredV3 EZH2 score:640, expCount:5, expNums:6,21,36,40,43, expScores:367,384,238,395,304, srow:233408
25550 chr1 119542961 119543270 wgEncodeRegTfbsClusteredV3 SUZ12 score:141, expCount:1, expNums:358, expScores:141, srow:233409
25550 chr1 119542994 119543237 wgEncodeRegTfbsClusteredV3 EGR1 score:320, expCount:1, expNums:216, expScores:320, srow:233410
25550 chr1 119543350 119543366 tfbsConsSites V$LUN1_01 score:791, zScore:3.2, srow:284434
25550 chr1 119543057 119543454 cpgIsland CpG: 32 length:398, cpgNum:32, gcNum:247, perCpg:16.1, perGc:62.1, obsExp:0.85, srow:1493
25550 chr1 119541057 119543056 cpgShore — values(x.gr)[overs$srow, ]:2746
  • 7 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25550 cellmeth_recounts PrEC: 0, LNCaP: 26, DU145: 12
25550 cellexp id=ENSG00000226172, name=RP4-712E4.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
25550 cellexp id=ENSG00000239216, name=RP4-712E4.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
25550 tcgameth site:cg02063759, B=0.26, L=0.55, H=0.55
25550 tcgameth site:cg12659883, B=0.27, L=0.58, H=0.56
25550 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305