DMR 25574 chr1:146543901-146545000 (1100bp)

DMR Stats
Positionchr1:146543901-146545000 (View on UCSC)
Width1100bp
Genomic Contextpromoter
Nearest GenesTRNA_His (0bp away)
ANODEV p-value1.15524581354e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25574 TRNA_His 1521 uc021ovi.1 chr1 146544773 146544844 + 72 6.55 0.87 1 100.0 E1 (6.55) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25574 chr1 146544026 146545195 wgEncodeRegDnaseClusteredV2 41 score:443, srow:68430
25574 chr1 146543827 146544250 wgEncodeRegTfbsClusteredV3 RPC155 score:201, expCount:1, expNums:531, expScores:201, srow:239738
25574 chr1 146543868 146544924 wgEncodeRegTfbsClusteredV3 EZH2 score:474, expCount:5, expNums:6,21,36,38,40, expScores:467,474,258,192,224, srow:239739
25574 chr1 146543895 146544280 wgEncodeRegTfbsClusteredV3 TBP score:479, expCount:2, expNums:359,545, expScores:479,241, srow:239740
25574 chr1 146543937 146544260 wgEncodeRegTfbsClusteredV3 E2F6 score:154, expCount:1, expNums:215, expScores:154, srow:239741
25574 chr1 146544012 146544681 wgEncodeRegTfbsClusteredV3 RBBP5 score:228, expCount:1, expNums:8, expScores:228, srow:239742
25574 chr1 146544549 146544950 wgEncodeRegTfbsClusteredV3 TBP score:1000, expCount:3, expNums:317,359,545, expScores:199,1000,247, srow:239743
25574 chr1 146544603 146544925 wgEncodeRegTfbsClusteredV3 PAX5 score:291, expCount:2, expNums:100,101, expScores:291,153, srow:239744
25574 chr1 146544657 146544926 wgEncodeRegTfbsClusteredV3 GTF3C2 score:131, expCount:1, expNums:546, expScores:131, srow:239745
25574 chr1 146544682 146544937 wgEncodeRegTfbsClusteredV3 RPC155 score:736, expCount:1, expNums:531, expScores:736, srow:239746
25574 chr1 146544746 146544985 wgEncodeRegTfbsClusteredV3 USF1 score:294, expCount:1, expNums:161, expScores:294, srow:239747
25574 chr1 146544776 146544846 phastConsElements100way lod=29 score:327, srow:514503
25574 chr1 146543988 146544439 cpgIsland CpG: 37 length:452, cpgNum:37, gcNum:274, perCpg:16.4, perGc:60.6, obsExp:0.9, srow:1562
25574 chr1 146541988 146543987 cpgShore — values(x.gr)[overs$srow, ]:2872
25574 chr1 146544440 146546439 cpgShore — values(x.gr)[overs$srow, ]:2873
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25574 cellmeth_recounts PrEC: 3, LNCaP: 35, DU145: 100
25574 cellmeth_diffreps_PrECvsLNCaP A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00296620769710024
25574 cellmeth_diffreps_PrECvsDU145 A=0, B=17, Length=340, Event=Up, log2FC=Inf, padj=7.41301388411866e-05
25574 cellmeth_diffreps_PrECvsDU145 A=4, B=66, Length=860, Event=Up, log2FC=4.04, padj=7.20014279297626e-14
25574 cellmeth_diffreps_LNCaPvsDU145 A=0, B=32.74, Length=380, Event=Up, log2FC=Inf, padj=6.06755184566737e-09
25574 cellexp id=ENSG00000227242, name=NBPF13P, PrEC=15, str=32, LNCaP=9, str=3, DU145=3, str=4
25574 tcgameth site:cg01701555, B=0.46, L=0.64, H=0.62
25574 tcgameth site:cg10124710, B=0.3, L=0.64, H=0.59
25574 tcgameth site:cg23019889, B=0.48, L=0.71, H=0.72
25574 tcgaexp gene=NBPF9, entrez=400818, pos=chr1:144146811-148346929(-), B=433, L=627, M=621, H=693
25574 tcgaexp gene=PPIAL4B, entrez=653505, pos=chr1:144363462-149553787(-), B=0, L=0, M=0, H=0
25574 tcgaexp gene=LINC00623, entrez=728855, pos=chr1:144300512-149616786(-), B=727, L=966, M=1062, H=1250
25574 tcgaexp gene=GPR89C, entrez=728932, pos=chr1:145883868-147465755(+), B=144, L=216, M=221, H=229
25574 tcgaexp gene=PDZK1P1, entrez=728939, pos=chr1:145924388-147484331(-), B=12, L=18, M=14, H=12
25574 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305