DMR 25575 chr1:146549301-146552750 (3450bp)

DMR Stats
Positionchr1:146549301-146552750 (View on UCSC)
Width3450bp
Genomic Contextpromoter
Nearest GenesTRNA_Pseudo (0bp away)
ANODEV p-value2.54343356254e-06
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25575 TRNA_Pseudo 1522 uc021ovj.1 chr1 146550178 146550249 + 72 2.09 0.31 1 39.91 E1 (2.09) 56.49
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25575 chr1 146548826 146549475 wgEncodeRegDnaseClusteredV2 19 score:274, srow:68434
25575 chr1 146549506 146552150 wgEncodeRegDnaseClusteredV2 48 score:399, srow:68435
25575 chr1 146552186 146552975 wgEncodeRegDnaseClusteredV2 33 score:527, srow:68436
25575 chr1 146549324 146553009 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:384,305,187,111,320,303,202,213,262, srow:239750
25575 chr1 146549363 146549686 wgEncodeRegTfbsClusteredV3 BACH1 score:184, expCount:1, expNums:341, expScores:184, srow:239751
25575 chr1 146549452 146549761 wgEncodeRegTfbsClusteredV3 SUZ12 score:89, expCount:1, expNums:358, expScores:89, srow:239752
25575 chr1 146549485 146549754 wgEncodeRegTfbsClusteredV3 CTCF score:128, expCount:1, expNums:5, expScores:128, srow:239753
25575 chr1 146549754 146549993 wgEncodeRegTfbsClusteredV3 USF1 score:264, expCount:1, expNums:161, expScores:264, srow:239754
25575 chr1 146549855 146550374 wgEncodeRegTfbsClusteredV3 SIN3A score:180, expCount:1, expNums:357, expScores:180, srow:239755
25575 chr1 146550257 146550566 wgEncodeRegTfbsClusteredV3 SUZ12 score:92, expCount:1, expNums:358, expScores:92, srow:239756
25575 chr1 146550659 146550988 wgEncodeRegTfbsClusteredV3 MAX score:124, expCount:1, expNums:352, expScores:124, srow:239757
25575 chr1 146550999 146551308 wgEncodeRegTfbsClusteredV3 SUZ12 score:156, expCount:1, expNums:358, expScores:156, srow:239758
25575 chr1 146551328 146551637 wgEncodeRegTfbsClusteredV3 MYC score:253, expCount:1, expNums:624, expScores:253, srow:239759
25575 chr1 146551798 146552093 wgEncodeRegTfbsClusteredV3 CTCF score:182, expCount:4, expNums:603,635,648,688, expScores:165,158,101,182, srow:239760
25575 chr1 146551864 146552103 wgEncodeRegTfbsClusteredV3 SPI1 score:176, expCount:1, expNums:126, expScores:176, srow:239761
25575 chr1 146552331 146552753 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:24, expNums:2,5,39,137,290,597,601,603,604,605,606,607,609,621,635,648,651,652,653,659,671,676,683,688, expScores:119,485,149,402,333,159,326,1000,429,810,116,368,387,176,923,180,131,483,157,130,171,113,203,966, srow:239762
25575 chr1 146552379 146552688 wgEncodeRegTfbsClusteredV3 SUZ12 score:214, expCount:1, expNums:358, expScores:214, srow:239763
25575 chr1 146552412 146552675 wgEncodeRegTfbsClusteredV3 RAD21 score:898, expCount:5, expNums:108,149,231,310,355, expScores:128,898,142,172,572, srow:239764
25575 chr1 146549851 146550075 cpgIsland CpG: 19 length:225, cpgNum:19, gcNum:145, perCpg:16.9, perGc:64.4, obsExp:0.82, srow:1563
25575 chr1 146550291 146551260 cpgIsland CpG: 71 length:970, cpgNum:71, gcNum:583, perCpg:14.6, perGc:60.1, obsExp:0.82, srow:1564
25575 chr1 146551477 146551764 cpgIsland CpG: 25 length:288, cpgNum:25, gcNum:184, perCpg:17.4, perGc:63.9, obsExp:0.87, srow:1565
25575 chr1 146552329 146552577 cpgIsland CpG: 20 length:249, cpgNum:20, gcNum:160, perCpg:16.1, perGc:64.3, obsExp:0.78, srow:1566
25575 chr1 146547851 146549850 cpgShore — values(x.gr)[overs$srow, ]:2874
25575 chr1 146550076 146550290 cpgShore — values(x.gr)[overs$srow, ]:2875
25575 chr1 146551261 146551476 cpgShore — values(x.gr)[overs$srow, ]:2876
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  • 25 of 27 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25575 cellmeth_recounts PrEC: 12, LNCaP: 156, DU145: 291
25575 cellmeth_diffreps_PrECvsLNCaP A=0, B=20, Length=380, Event=Up, log2FC=Inf, padj=7.90773854123128e-06
25575 cellmeth_diffreps_PrECvsLNCaP A=1, B=39, Length=620, Event=Up, log2FC=5.29, padj=9.71620556128253e-10
25575 cellmeth_diffreps_PrECvsDU145 A=1, B=83, Length=1140, Event=Up, log2FC=6.38, padj=0
25575 cellmeth_diffreps_PrECvsDU145 A=1, B=111, Length=1320, Event=Up, log2FC=6.79, padj=0
25575 cellmeth_diffreps_LNCaPvsDU145 A=1.07, B=27.13, Length=320, Event=Up, log2FC=4.67, padj=1.11153816930177e-05
25575 cellexp id=ENSG00000201142, name=RNVU1-8, PrEC=0, str=0, LNCaP=2, str=1, DU145=0, str=0
25575 cellexp id=ENSG00000227242, name=NBPF13P, PrEC=15, str=32, LNCaP=9, str=3, DU145=3, str=4
25575 tcgameth site:cg00044796, B=0.43, L=0.69, H=0.65
25575 tcgameth site:cg02487331, B=0.36, L=0.65, H=0.61
25575 tcgameth site:cg11576274, B=0.31, L=0.52, H=0.49
25575 tcgameth site:cg16700924, B=0.36, L=0.63, H=0.59
25575 tcgameth site:cg16814483, B=0.28, L=0.65, H=0.59
25575 tcgameth site:cg21908235, B=0.23, L=0.68, H=0.65
25575 tcgaexp gene=NBPF9, entrez=400818, pos=chr1:144146811-148346929(-), B=433, L=627, M=621, H=693
25575 tcgaexp gene=PPIAL4B, entrez=653505, pos=chr1:144363462-149553787(-), B=0, L=0, M=0, H=0
25575 tcgaexp gene=LINC00623, entrez=728855, pos=chr1:144300512-149616786(-), B=727, L=966, M=1062, H=1250
25575 tcgaexp gene=GPR89C, entrez=728932, pos=chr1:145883868-147465755(+), B=144, L=216, M=221, H=229
25575 tcgaexp gene=PDZK1P1, entrez=728939, pos=chr1:145924388-147484331(-), B=12, L=18, M=14, H=12
25575 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305