DMR 25576 chr1:146555451-146557100 (1650bp)

DMR Stats
Positionchr1:146555451-146557100 (View on UCSC)
Width1650bp
Genomic Contextintergenic
Nearest GenesTRNA_Pseudo (5201bp away)
ANODEV p-value3.08799205299e-08
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25576 chr1 146555541 146555775 wgEncodeRegDnaseClusteredV2 3 score:301, srow:68439
25576 chr1 146555846 146556695 wgEncodeRegDnaseClusteredV2 123 score:1000, srow:68440
25576 chr1 146556966 146557335 wgEncodeRegDnaseClusteredV2 9 score:295, srow:68441
25576 chr1 146555124 146556142 wgEncodeRegTfbsClusteredV3 EZH2 score:356, expCount:4, expNums:6,21,38,43, expScores:270,356,251,296, srow:239766
25576 chr1 146555348 146557131 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:68, expNums:11,22,32,41,61,62,104,105,123,124,130,131,146,147,168,191,192,206,207,228,229,249,256,259,275,283,306,307,308,326,328,330,332,334,336,338,340,366,402,403,445,446,461,465,520,521,522,523,524,525,526,527,563,564,577,583,596,599,602,610,613,616,619,622,632,633,634,637, expScores:523,489,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,773,692,757,650,1000,1000,477,1000,1000,981,1000,1000,1000,1000,1000,1000,1000,1000,131,1000,239,353,1000,1000,1000,1000,1000,582,1000,378,349,1000,148,1000,1000,707,1000,1000,118,1000,1000,1000,524,987,1000,482,673,1000,754, srow:239767
25576 chr1 146555532 146555807 wgEncodeRegTfbsClusteredV3 TAL1 score:628, expCount:1, expNums:542, expScores:628, srow:239768
25576 chr1 146555668 146556456 wgEncodeRegTfbsClusteredV3 KDM5B score:994, expCount:1, expNums:31, expScores:994, srow:239769
25576 chr1 146555672 146556175 wgEncodeRegTfbsClusteredV3 CHD1 score:150, expCount:1, expNums:23, expScores:150, srow:239770
25576 chr1 146555729 146556408 wgEncodeRegTfbsClusteredV3 SMARCA4 score:153, expCount:2, expNums:377,475, expScores:144,153, srow:239771
25576 chr1 146555731 146556518 wgEncodeRegTfbsClusteredV3 TAF7 score:1000, expCount:2, expNums:158,239, expScores:1000,1000, srow:239772
25576 chr1 146555747 146556557 wgEncodeRegTfbsClusteredV3 PML score:1000, expCount:2, expNums:103,227, expScores:1000,541, srow:239773
25576 chr1 146555753 146556424 wgEncodeRegTfbsClusteredV3 MTA3 score:1000, expCount:1, expNums:95, expScores:481, srow:239774
25576 chr1 146555788 146556415 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:441, expCount:2, expNums:543,544, expScores:192,441, srow:239775
25576 chr1 146555795 146556657 wgEncodeRegTfbsClusteredV3 SMARCB1 score:252, expCount:1, expNums:391, expScores:185, srow:239776
25576 chr1 146555796 146556031 wgEncodeRegTfbsClusteredV3 HDAC2 score:197, expCount:1, expNums:222, expScores:197, srow:239777
25576 chr1 146555804 146556656 wgEncodeRegTfbsClusteredV3 POU2F2 score:1000, expCount:2, expNums:106,125, expScores:1000,1000, srow:239778
25576 chr1 146555807 146556396 wgEncodeRegTfbsClusteredV3 IKZF1 score:513, expCount:1, expNums:294, expScores:513, srow:239779
25576 chr1 146555808 146556271 wgEncodeRegTfbsClusteredV3 RDBP score:230, expCount:1, expNums:514, expScores:230, srow:239780
25576 chr1 146555818 146556401 wgEncodeRegTfbsClusteredV3 YY1 score:476, expCount:6, expNums:119,133,162,245,551,579, expScores:280,258,200,476,121,132, srow:239781
25576 chr1 146555831 146556562 wgEncodeRegTfbsClusteredV3 TCF7L2 score:317, expCount:2, expNums:414,581, expScores:317,201, srow:239782
25576 chr1 146555833 146556102 wgEncodeRegTfbsClusteredV3 USF2 score:140, expCount:1, expNums:550, expScores:140, srow:239783
25576 chr1 146555838 146556587 wgEncodeRegTfbsClusteredV3 STAT1 score:295, expCount:2, expNums:314,410, expScores:141,152, srow:239784
25576 chr1 146555839 146556402 wgEncodeRegTfbsClusteredV3 STAT5A score:854, expCount:2, expNums:114,237, expScores:854,659, srow:239785
25576 chr1 146555844 146556444 wgEncodeRegTfbsClusteredV3 CHD2 score:346, expCount:3, expNums:345,380,479, expScores:226,151,233, srow:239786
25576 chr1 146555854 146556228 wgEncodeRegTfbsClusteredV3 IRF1 score:365, expCount:3, expNums:504,505,506, expScores:365,302,164, srow:239787
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  • 25 of 121 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25576 cellmeth_recounts PrEC: 19, LNCaP: 18, DU145: 24
25576 cellmeth_diffreps_PrECvsLNCaP A=28, B=1, Length=380, Event=Down, log2FC=-4.81, padj=1.25027267318873e-06
25576 cellexp id=ENSG00000227242, name=NBPF13P, PrEC=15, str=32, LNCaP=9, str=3, DU145=3, str=4
25576 tcgameth site:cg00693978, B=0.18, L=0.51, H=0.48
25576 tcgameth site:cg24856140, B=0.09, L=0.48, H=0.38
25576 tcgaexp gene=NBPF9, entrez=400818, pos=chr1:144146811-148346929(-), B=433, L=627, M=621, H=693
25576 tcgaexp gene=PPIAL4B, entrez=653505, pos=chr1:144363462-149553787(-), B=0, L=0, M=0, H=0
25576 tcgaexp gene=LINC00623, entrez=728855, pos=chr1:144300512-149616786(-), B=727, L=966, M=1062, H=1250
25576 tcgaexp gene=GPR89C, entrez=728932, pos=chr1:145883868-147465755(+), B=144, L=216, M=221, H=229
25576 tcgaexp gene=PDZK1P1, entrez=728939, pos=chr1:145924388-147484331(-), B=12, L=18, M=14, H=12
25576 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305