DMR 25602 chr1:149672251-149672700 (450bp)
| DMR Stats | |
|---|---|
| Position | chr1:149672251-149672700 (View on UCSC) |
| Width | 450bp |
| Genomic Context | promoter |
| Nearest Genes | LINC00869 (0bp away) |
| ANODEV p-value | 0.00257080269797 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25602 | LINC00869 | 1586 | uc009wlc.3 | chr1 | 149576262 | 149672733 | + | 450 | 100.0 | 0.09 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (11.11), E4 (88.89) | 100.0 |
| 25602 | LINC00869 | 1586 | uc009wld.3 | chr1 | 149576262 | 149672733 | + | 450 | 100.0 | 0.07 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (11.11), E3 (88.89) | 100.0 |
| 25602 | LINC00869 | 1586 | uc031poo.1 | chr1 | 149576262 | 149672733 | + | 450 | 100.0 | 0.09 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (11.11), E4 (88.89) | 100.0 |
| 25602 | LINC00869 | 1586 | uc031pop.1 | chr1 | 149576262 | 149672733 | + | 450 | 100.0 | 0.07 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (11.11), E3 (88.89) | 100.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25602 | chr1 | 149672481 | 149672675 | wgEncodeRegDnaseClusteredV2 | 10 | score:379, srow:69205 |
| 25602 | chr1 | 149672099 | 149672938 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:262, expCount:2, expNums:36,38, expScores:243,262, srow:242675 |
| 25602 | chr1 | 149671992 | 149673412 | cpgIsland | CpG: 94 | length:1421, cpgNum:94, gcNum:818, perCpg:13.2, perGc:57.6, obsExp:0.8, srow:1638 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25602 | cellmeth_recounts | PrEC: 12, LNCaP: 15, DU145: 12 |  |
| 25602 | cellmeth_diffreps_PrECvsDU145 | A=18, B=2, Length=300, Event=Down, log2FC=-3.17, padj=0.00412488368072607 |  |
| 25602 | cellexp | id=ENSG00000234232, name=RP11-353N4.5, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 25602 | tcgameth | site:cg07591519, B=0.3, L=0.42, H=0.43 |  |
| 25602 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |