DMR 25612 chr1:151103501-151104450 (950bp)

DMR Stats
Positionchr1:151103501-151104450 (View on UCSC)
Width950bp
Genomic Context3' end
Nearest GenesSEMA6C (0bp away)
ANODEV p-value6.8136838709e-05
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25612 SEMA6C 1653 uc001ewu.3 chr1 151104163 151119140 - 288 30.32 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (30.32) 100.0
25612 SEMA6C 1653 uc001ewv.3 chr1 151104163 151119140 - 288 30.32 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (30.32) 100.0
25612 SEMA6C 1653 uc001eww.3 chr1 151104163 151119140 - 288 30.32 1.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (30.32) 100.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25612 chr1 151103586 151103655 wgEncodeRegDnaseClusteredV2 2 score:190, srow:70042
25612 chr1 151103681 151104015 wgEncodeRegDnaseClusteredV2 96 score:1000, srow:70043
25612 chr1 151104021 151104375 wgEncodeRegDnaseClusteredV2 8 score:342, srow:70044
25612 chr1 151104386 151105775 wgEncodeRegDnaseClusteredV2 38 score:1000, srow:70045
25612 chr1 151103364 151104033 wgEncodeRegTfbsClusteredV3 RBBP5 score:176, expCount:1, expNums:8, expScores:176, srow:248179
25612 chr1 151103502 151103991 wgEncodeRegTfbsClusteredV3 TAF1 score:160, expCount:1, expNums:157, expScores:160, srow:248180
25612 chr1 151103521 151104246 wgEncodeRegTfbsClusteredV3 POLR2A score:433, expCount:6, expNums:146,147,332,334,336,338, expScores:433,415,265,200,357,265, srow:248181
25612 chr1 151103530 151103904 wgEncodeRegTfbsClusteredV3 CTCF score:188, expCount:5, expNums:643,659,661,662,682, expScores:140,188,125,183,127, srow:248182
25612 chr1 151103558 151103813 wgEncodeRegTfbsClusteredV3 HDAC2 score:139, expCount:1, expNums:141, expScores:139, srow:248183
25612 chr1 151103562 151103801 wgEncodeRegTfbsClusteredV3 RAD21 score:191, expCount:1, expNums:149, expScores:191, srow:248184
25612 chr1 151103633 151103882 wgEncodeRegTfbsClusteredV3 TEAD4 score:194, expCount:1, expNums:160, expScores:194, srow:248185
25612 chr1 151103633 151104008 wgEncodeRegTfbsClusteredV3 TBP score:226, expCount:1, expNums:359, expScores:226, srow:248186
25612 chr1 151103637 151104024 wgEncodeRegTfbsClusteredV3 CHD2 score:427, expCount:2, expNums:288,345, expScores:233,427, srow:248187
25612 chr1 151103652 151104041 wgEncodeRegTfbsClusteredV3 SP2 score:604, expCount:1, expNums:154, expScores:604, srow:248188
25612 chr1 151103669 151104252 wgEncodeRegTfbsClusteredV3 NFYB score:469, expCount:1, expNums:302, expScores:125, srow:248189
25612 chr1 151103671 151104174 wgEncodeRegTfbsClusteredV3 EZH2 score:371, expCount:1, expNums:15, expScores:371, srow:248190
25612 chr1 151103681 151103920 wgEncodeRegTfbsClusteredV3 EGR1 score:212, expCount:1, expNums:87, expScores:212, srow:248191
25612 chr1 151103696 151104015 wgEncodeRegTfbsClusteredV3 NFYA score:147, expCount:1, expNums:301, expScores:147, srow:248192
25612 chr1 151103718 151104048 wgEncodeRegTfbsClusteredV3 USF1 score:193, expCount:2, expNums:118,161, expScores:146,193, srow:248193
25612 chr1 151103731 151104000 wgEncodeRegTfbsClusteredV3 FOS score:146, expCount:1, expNums:286, expScores:146, srow:248194
25612 chr1 151103769 151103964 wgEncodeRegTfbsClusteredV3 SP1 score:687, expCount:2, expNums:112,153, expScores:586,687, srow:248195
25612 chr1 151103790 151103959 wgEncodeRegTfbsClusteredV3 PBX3 score:906, expCount:1, expNums:102, expScores:906, srow:248196
25612 chr1 151103856 151104099 wgEncodeRegTfbsClusteredV3 JUND score:140, expCount:1, expNums:142, expScores:140, srow:248197
25612 chr1 151104221 151104890 wgEncodeRegTfbsClusteredV3 RBBP5 score:177, expCount:1, expNums:8, expScores:177, srow:248198
25612 chr1 151104445 151105074 wgEncodeRegTfbsClusteredV3 EZH2 score:269, expCount:1, expNums:40, expScores:269, srow:248199
  • Page 1 of 2
  • 25 of 42 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25612 cellmeth_recounts PrEC: 15, LNCaP: 1613, DU145: 19
25612 cellmeth_diffreps_PrECvsLNCaP A=1164, B=5542, Length=3100, Event=Up, log2FC=2.25, padj=0
25612 cellmeth_diffreps_PrECvsDU145 A=1161, B=58, Length=1940, Event=Down, log2FC=-4.32, padj=0
25612 cellmeth_diffreps_LNCaPvsDU145 A=5924.65, B=72.96, Length=3100, Event=Down, log2FC=-6.34, padj=0
25612 cellexp id=ENSG00000143434, name=SEMA6C, PrEC=118, str=245, LNCaP=266, str=151, DU145=519, str=196
25612 cellexp id=ENSG00000261168, name=RP11-68I18.10, PrEC=2, str=5, LNCaP=8, str=5, DU145=18, str=7
25612 tcgameth site:cg04065086, B=0.28, L=0.5, H=0.53
25612 tcgameth site:cg07119434, B=0.21, L=0.51, H=0.51
25612 tcgameth site:cg07371589, B=0.36, L=0.62, H=0.63
25612 tcgameth site:cg19706516, B=0.13, L=0.36, H=0.4
25612 tcgaexp gene=SEMA6C, entrez=10500, pos=chr1:151104163-151119140(-), B=425, L=315, M=380, H=392
25612 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305