DMR 25620 chr1:152080101-152080450 (350bp)

DMR Stats
Positionchr1:152080101-152080450 (View on UCSC)
Width350bp
Genomic Contextexon
Nearest GenesTCHH (0bp away)
ANODEV p-value0.000396333526633
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25620 TCHH 1697 uc001ezp.3 chr1 152078793 152087930 - 350 100.0 58.33 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) 0.0
25620 TCHH 1697 uc009wne.1 chr1 152078793 152117706 - 350 100.0 0.45 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (100) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25620 chr1 152080086 152081395 wgEncodeRegDnaseClusteredV2 70 score:722, srow:70820
25620 chr1 152079594 152081092 wgEncodeRegTfbsClusteredV3 EZH2 score:340, expCount:4, expNums:6,15,40,43, expScores:305,282,211,340, srow:252377
25620 chr1 152079955 152080344 wgEncodeRegTfbsClusteredV3 POLR2A score:315, expCount:2, expNums:632,633, expScores:315,297, srow:252378
25620 chr1 152079981 152080903 wgEncodeRegTfbsClusteredV3 KAP1 score:1000, expCount:2, expNums:365,588, expScores:796,328, srow:252379
25620 chr1 152080089 152080899 wgEncodeRegTfbsClusteredV3 TCF12 score:377, expCount:1, expNums:66, expScores:347, srow:252380
25620 chr1 152080148 152080721 wgEncodeRegTfbsClusteredV3 CTCF score:790, expCount:11, expNums:48,595,609,635,636,638,646,661,663,665,671, expScores:96,790,101,459,188,133,124,151,144,119,105, srow:252381
25620 chr1 152080362 152080901 wgEncodeRegTfbsClusteredV3 GABPA score:231, expCount:1, expNums:54, expScores:231, srow:252382
25620 chr1 152080399 152080774 wgEncodeRegTfbsClusteredV3 TCF7L2 score:175, expCount:1, expNums:363, expScores:175, srow:252383
25620 chr1 152080425 152080925 wgEncodeRegTfbsClusteredV3 SETDB1 score:581, expCount:1, expNums:589, expScores:375, srow:252384
25620 chr1 152080153 152080153 cosmic COSM1334059 srow:64357
25620 chr1 152080220 152080220 cosmic COSM528882 srow:64358
25620 chr1 152080239 152080239 cosmic COSM1293181 srow:64359
25620 chr1 152080243 152080243 cosmic COSM226459 srow:64360
25620 chr1 152080244 152080244 cosmic COSM241857 srow:64361
25620 chr1 152080263 152080263 cosmic COSM247764 srow:64362
25620 chr1 152080269 152080269 cosmic COSM1295063 srow:64363
25620 chr1 152080273 152080273 cosmic COSM895979 srow:64364
25620 chr1 152080282 152080282 cosmic COSM895980 srow:64365
25620 chr1 152080284 152080284 cosmic COSM1295064 srow:64366
25620 chr1 152080295 152080295 cosmic COSM895981 srow:64367
25620 chr1 152080302 152080302 cosmic COSM895982 srow:64368
25620 chr1 152080307 152080307 cosmic COSM895983 srow:64369
25620 chr1 152080308 152080308 cosmic COSM1334060 srow:64370
25620 chr1 152080308 152080308 cosmic COSM1267560 srow:64371
25620 chr1 152080310 152080310 cosmic COSM76691 srow:64372
  • Page 1 of 2
  • 25 of 35 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25620 cellmeth_recounts PrEC: 3, LNCaP: 24, DU145: 9
25620 cellmeth_diffreps_PrECvsLNCaP A=0, B=12, Length=220, Event=Up, log2FC=Inf, padj=0.00157949948552458
25620 cellmeth_diffreps_LNCaPvsDU145 A=16.04, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000429069423162017
25620 cellexp id=ENSG00000159450, name=TCHH, PrEC=6, str=48, LNCaP=44, str=19, DU145=97, str=42
25620 tcgameth site:cg15973171, B=0.36, L=0.5, H=0.46
25620 tcgaexp gene=TCHH, entrez=7062, pos=chr1:152078793-152117706(-), B=16, L=14, M=17, H=27
25620 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305