DMR 25640 chr1:155290251-155291150 (900bp)
| DMR Stats | |
|---|---|
| Position | chr1:155290251-155291150 (View on UCSC) |
| Width | 900bp |
| Genomic Context | promoter |
| Nearest Genes | FDPS, RUSC1-AS1, RUSC1 (0bp away) |
| ANODEV p-value | 0.000394244852847 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25640 | FDPS | 1826 | uc001fkc.2 | chr1 | 155278539 | 155290457 | + | 207 | 23.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (23) | 100.0 |
| 25640 | FDPS | 1826 | uc001fkd.2 | chr1 | 155278539 | 155290457 | + | 207 | 23.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (23) | 100.0 |
| 25640 | FDPS | 1826 | uc001fke.2 | chr1 | 155278705 | 155290457 | + | 207 | 23.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (23) | 100.0 |
| 25640 | RUSC1-AS1 | 1827 | uc001fkh.1 | chr1 | 155286654 | 155291335 | - | 900 | 100.0 | 0.07 | 1 | 35.0 | E1 (25), I1 (75), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 25640 | RUSC1-AS1 | 1827 | uc001fki.3 | chr1 | 155290251 | 155293938 | - | 900 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
| 25640 | RUSC1 | 1828 | uc001fkj.2 | chr1 | 155290640 | 155300909 | + | 511 | 56.78 | 0.05 | 0 | 98.78 | E1 (15.89), I1 (41), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 25640 | RUSC1 | 1828 | uc001fkk.2 | chr1 | 155290640 | 155300909 | + | 511 | 56.78 | 0.09 | 0 | 98.78 | E1 (15.89), I1 (41), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 25640 | FDPS | 1826 | uc021paw.1 | chr1 | 155278539 | 155290457 | + | 207 | 23.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (23) | 100.0 |
| 25640 | FDPS | 1826 | uc021pax.1 | chr1 | 155278539 | 155290457 | + | 207 | 23.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (23) | 100.0 |
- 9 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25640 | chr1 | 155290481 | 155292215 | wgEncodeRegDnaseClusteredV2 | 114 | score:1000, srow:72985 |
| 25640 | chr1 | 155288379 | 155291940 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:988, expCount:41, expNums:61,62,78,105,146,147,163,191,192,206,207,229,256,259,275,306,308,326,330,336,338,340,366,402,403,445,461,520,522,524,525,526,527,599,602,613,616,619,622,634,637, expScores:342,238,371,988,310,334,206,262,215,345,451,615,242,452,572,273,258,582,306,175,227,191,133,269,253,142,163,219,291,164,415,519,159,119,162,155,313,155,245,229,378, srow:263755 |
| 25640 | chr1 | 155290375 | 155290970 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:309, expCount:1, expNums:96, expScores:309, srow:263756 |
| 25640 | chr1 | 155290418 | 155290787 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:267, expCount:1, expNums:109, expScores:267, srow:263757 |
| 25640 | chr1 | 155290435 | 155290874 | wgEncodeRegTfbsClusteredV3 | MYC | score:219, expCount:1, expNums:489, expScores:219, srow:263758 |
| 25640 | chr1 | 155290476 | 155290795 | wgEncodeRegTfbsClusteredV3 | SP1 | score:148, expCount:1, expNums:112, expScores:148, srow:263759 |
| 25640 | chr1 | 155290485 | 155291195 | wgEncodeRegTfbsClusteredV3 | HMGN3 | score:324, expCount:1, expNums:501, expScores:122, srow:263760 |
| 25640 | chr1 | 155290486 | 155290921 | wgEncodeRegTfbsClusteredV3 | MAZ | score:378, expCount:2, expNums:297,512, expScores:267,378, srow:263761 |
| 25640 | chr1 | 155290490 | 155290849 | wgEncodeRegTfbsClusteredV3 | IRF1 | score:156, expCount:1, expNums:506, expScores:156, srow:263762 |
| 25640 | chr1 | 155290501 | 155291205 | wgEncodeRegTfbsClusteredV3 | CCNT2 | score:236, expCount:1, expNums:476, expScores:128, srow:263763 |
| 25640 | chr1 | 155290506 | 155291025 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:180, expCount:1, expNums:357, expScores:180, srow:263764 |
| 25640 | chr1 | 155290514 | 155290781 | wgEncodeRegTfbsClusteredV3 | NRF1 | score:519, expCount:3, expNums:303,354,518, expScores:433,519,245, srow:263765 |
| 25640 | chr1 | 155290516 | 155290811 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:188, expCount:1, expNums:255, expScores:188, srow:263766 |
| 25640 | chr1 | 155290533 | 155290776 | wgEncodeRegTfbsClusteredV3 | JUND | score:148, expCount:1, expNums:142, expScores:148, srow:263767 |
| 25640 | chr1 | 155290542 | 155290897 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:270, expCount:1, expNums:83, expScores:270, srow:263768 |
| 25640 | chr1 | 155290548 | 155290763 | wgEncodeRegTfbsClusteredV3 | CTCF | score:150, expCount:1, expNums:137, expScores:150, srow:263769 |
| 25640 | chr1 | 155290574 | 155291137 | wgEncodeRegTfbsClusteredV3 | MBD4 | score:236, expCount:1, expNums:185, expScores:236, srow:263770 |
| 25640 | chr1 | 155290576 | 155290939 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:225, expCount:1, expNums:88, expScores:225, srow:263771 |
| 25640 | chr1 | 155290634 | 155290953 | wgEncodeRegTfbsClusteredV3 | POU2F2 | score:222, expCount:1, expNums:106, expScores:222, srow:263772 |
| 25640 | chr1 | 155290639 | 155291298 | wgEncodeRegTfbsClusteredV3 | MTA3 | score:309, expCount:1, expNums:95, expScores:309, srow:263773 |
| 25640 | chr1 | 155290634 | 155290657 | tfbsConsSites | V$BRACH_01 | score:701, zScore:2.13, srow:313771 |
| 25640 | chr1 | 155290638 | 155290658 | tfbsConsSites | V$PAX6_01 | score:819, zScore:3.03, srow:313772 |
| 25640 | chr1 | 155290639 | 155290648 | tfbsConsSites | V$HMX1_01 | score:824, zScore:1.91, srow:313773 |
| 25640 | chr1 | 155290640 | 155290651 | tfbsConsSites | V$EGR1_01 | score:858, zScore:2.16, srow:313774 |
| 25640 | chr1 | 155290640 | 155290651 | tfbsConsSites | V$EGR2_01 | score:840, zScore:1.88, srow:313775 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25640 | cellmeth_recounts | PrEC: 29, LNCaP: 69, DU145: 60 |  |
| 25640 | cellmeth_diffreps_PrECvsLNCaP | A=5, B=26, Length=240, Event=Up, log2FC=2.38, padj=0.00263389182989827 |  |
| 25640 | cellmeth_diffreps_PrECvsLNCaP | A=20, B=1, Length=220, Event=Down, log2FC=-4.32, padj=0.000201590809901977 |  |
| 25640 | cellexp | id=ENSG00000160752, name=FDPS, PrEC=2265, str=1379, LNCaP=500, str=885, DU145=1578, str=1237 |  |
| 25640 | cellexp | id=ENSG00000160753, name=RUSC1, PrEC=4617, str=3675, LNCaP=2814, str=2933, DU145=4714, str=5748 |  |
| 25640 | cellexp | id=ENSG00000225855, name=RUSC1-AS1, PrEC=333, str=867, LNCaP=131, str=161, DU145=324, str=270 |  |
| 25640 | tcgameth | site:cg08170787, B=0.3, L=0.54, H=0.48 |  |
| 25640 | tcgameth | site:cg08574629, B=0.25, L=0.55, H=0.46 |  |
| 25640 | tcgameth | site:cg15113766, B=0.42, L=0.65, H=0.57 |  |
| 25640 | tcgameth | site:cg15676040, B=0.2, L=0.4, H=0.32 |  |
| 25640 | tcgameth | site:cg24006126, B=0.2, L=0.51, H=0.41 |  |
| 25640 | tcgameth | site:cg24544490, B=0.27, L=0.62, H=0.55 |  |
| 25640 | tcgaexp | gene=FDPS, entrez=2224, pos=chr1:155278539-155290457(+), B=4929, L=4294, M=4350, H=4615 |  |
| 25640 | tcgaexp | gene=RUSC1, entrez=23623, pos=chr1:155290640-155300909(+), B=3103, L=4181, M=3841, H=4597 |  |
| 25640 | tcgaexp | gene=RUSC1-AS1, entrez=284618, pos=chr1:155290251-155293938(-), B=86, L=77, M=79, H=124 |  |
| 25640 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |