DMR 25700 chr1:166135301-166135500 (200bp)

DMR Stats
Positionchr1:166135301-166135500 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesFAM78B (0bp away)
ANODEV p-value0.036246420519
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25700 FAM78B 2084 uc010plc.2 chr1 166026690 166135958 - 200 100.0 0.37 1 21.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0) 0.0
25700 FAM78B 2084 uc021pee.1 chr1 166026690 166135958 - 200 100.0 0.29 0 21.0 E1 (100), I1 (0), E2 (0) 0.0
25700 FAM78B 2085 uc021pef.1 chr1 166039069 166135958 - 200 100.0 0.22 0 21.0 E1 (100), I1 (0), E2 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25700 chr1 166134186 166135495 wgEncodeRegDnaseClusteredV2 103 score:734, srow:79090
25700 chr1 166134851 166135559 wgEncodeRegTfbsClusteredV3 EZH2 score:449, expCount:3, expNums:15,21,40, expScores:302,409,326, srow:288640
25700 chr1 166135050 166135645 wgEncodeRegTfbsClusteredV3 TCF7L2 score:200, expCount:1, expNums:581, expScores:200, srow:288641
25700 chr1 166135065 166135874 wgEncodeRegTfbsClusteredV3 SUZ12 score:216, expCount:1, expNums:578, expScores:216, srow:288642
25700 chr1 166135296 166135307 tfbsConsSites V$E2F_03 score:849, zScore:1.69, srow:343282
25700 chr1 166135299 166135312 tfbsConsSites V$RREB1_01 score:848, zScore:2.32, srow:343283
25700 chr1 166135299 166135313 tfbsConsSites V$SPZ1_01 score:882, zScore:1.97, srow:343284
25700 chr1 166135299 166135326 tfbsConsSites V$PAX5_02 score:829, zScore:2.81, srow:343285
25700 chr1 166135302 166135314 tfbsConsSites V$MZF1_02 score:868, zScore:1.9, srow:343286
25700 chr1 166135303 166135312 tfbsConsSites V$GATA1_01 score:977, zScore:2.38, srow:343287
25700 chr1 166135303 166135312 tfbsConsSites V$GATA2_01 score:975, zScore:2.38, srow:343288
25700 chr1 166135303 166135317 tfbsConsSites V$TAXCREB_02 score:792, zScore:2.52, srow:343289
25700 chr1 166135304 166135312 tfbsConsSites V$GATA3_01 score:929, zScore:1.8, srow:343290
25700 chr1 166135310 166135322 tfbsConsSites V$PAX3_01 score:821, zScore:2.17, srow:343291
25700 chr1 166135344 166135371 tfbsConsSites V$PAX5_02 score:776, zScore:1.91, srow:343292
25700 chr1 166135346 166135359 tfbsConsSites V$MRF2_01 score:838, zScore:1.9, srow:343293
25700 chr1 166135355 166135367 tfbsConsSites V$PAX3_01 score:806, zScore:1.87, srow:343294
25700 chr1 166135385 166135396 tfbsConsSites V$NMYC_01 score:883, zScore:1.8, srow:343295
25700 chr1 166135389 166135416 tfbsConsSites V$PAX5_01 score:774, zScore:1.86, srow:343296
25700 chr1 166135437 166135444 tfbsConsSites V$E2F_02 score:896, zScore:2.02, srow:343297
25700 chr1 166135447 166135463 tfbsConsSites V$PPARG_03 score:807, zScore:2.31, srow:343298
25700 chr1 166135458 166135468 tfbsConsSites V$SREBP1_01 score:861, zScore:1.86, srow:343299
25700 chr1 166135466 166135478 tfbsConsSites V$OCT_C score:807, zScore:1.75, srow:343300
25700 chr1 166135325 166135325 cosmic COSM898965 srow:82966
25700 chr1 166135335 166135335 cosmic COSM1499419 srow:82967
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  • 25 of 43 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25700 cellmeth_recounts PrEC: 12, LNCaP: 513, DU145: 29
25700 cellmeth_diffreps_PrECvsLNCaP A=25, B=1205, Length=1680, Event=Up, log2FC=5.59, padj=0
25700 cellmeth_diffreps_LNCaPvsDU145 A=1288.2, B=46.77, Length=1660, Event=Down, log2FC=-4.78, padj=0
25700 cellexp id=ENSG00000188859, name=FAM78B, PrEC=9, str=9, LNCaP=0, str=0, DU145=2, str=1
25700 tcgaexp gene=FAM78B, entrez=149297, pos=chr1:166026690-166135958(-), B=43, L=31, M=35, H=29
25700 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305