DMR 25730 chr1:179561201-179561700 (500bp)
| DMR Stats | |
|---|---|
| Position | chr1:179561201-179561700 (View on UCSC) |
| Width | 500bp |
| Genomic Context | promoter |
| Nearest Genes | TDRD5 (0bp away) |
| ANODEV p-value | 4.75941825633e-10 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25730 | TDRD5 | 2233 | uc001gnf.2 | chr1 | 179560757 | 179660407 | + | 500 | 100.0 | 0.44 | 0 | 11.2 | E1 (12), I1 (88.2), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 25730 | TDRD5 | 2233 | uc010pnp.2 | chr1 | 179560757 | 179660407 | + | 500 | 100.0 | 0.15 | 0 | 11.2 | E1 (12), I1 (88.2), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
| 25730 | TDRD5 | 2233 | uc021pfm.1 | chr1 | 179560748 | 179660407 | + | 500 | 100.0 | 0.09 | 0 | 9.4 | E1 (0), I1 (48.8), E2 (51.2), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 25730 | TDRD5 | 2233 | uc021pfn.1 | chr1 | 179560989 | 179660407 | + | 500 | 100.0 | 0.09 | 0 | 57.6 | E1 (1), I1 (99.2), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25730 | chr1 | 179560646 | 179561515 | wgEncodeRegDnaseClusteredV2 | 51 | score:1000, srow:85080 |
| 25730 | chr1 | 179561686 | 179562015 | wgEncodeRegDnaseClusteredV2 | 6 | score:221, srow:85081 |
| 25730 | chr1 | 179560525 | 179561524 | wgEncodeRegTfbsClusteredV3 | E2F1 | score:1000, expCount:1, expNums:572, expScores:782, srow:310420 |
| 25730 | chr1 | 179560597 | 179561406 | wgEncodeRegTfbsClusteredV3 | SP4 | score:323, expCount:1, expNums:155, expScores:229, srow:310421 |
| 25730 | chr1 | 179560638 | 179561521 | wgEncodeRegTfbsClusteredV3 | CTCF | score:671, expCount:19, expNums:5,137,595,609,627,628,629,630,631,635,638,651,653,655,661,663,665,679,680, expScores:313,223,155,292,225,257,285,268,397,120,140,141,126,94,108,117,158,134,504, srow:310424 |
| 25730 | chr1 | 179560665 | 179561225 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:338, expCount:3, expNums:563,564,633, expScores:338,321,271, srow:310425 |
| 25730 | chr1 | 179560725 | 179561394 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:190, expCount:1, expNums:8, expScores:190, srow:310430 |
| 25730 | chr1 | 179560745 | 179561680 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:351, expCount:1, expNums:21, expScores:351, srow:310434 |
| 25730 | chr1 | 179561244 | 179561483 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:199, expCount:1, expNums:149, expScores:199, srow:310438 |
| 25730 | chr1 | 179561632 | 179561641 | tfbsConsSites | V$TATA_C | score:895, zScore:1.85, srow:373952 |
| 25730 | chr1 | 179561240 | 179561242 | phastConsElements100way | lod=13 | score:247, srow:645087 |
| 25730 | chr1 | 179560752 | 179561596 | cpgIsland | CpG: 74 | length:845, cpgNum:74, gcNum:584, perCpg:17.5, perGc:69.1, obsExp:0.74, srow:1959 |
| 25730 | chr1 | 179561597 | 179563596 | cpgShore | — | values(x.gr)[overs$srow, ]:3605 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25730 | cellmeth_recounts | PrEC: 13, LNCaP: 35, DU145: 19 |  |
| 25730 | cellmeth_diffreps_LNCaPvsDU145 | A=25.66, B=3.74, Length=260, Event=Down, log2FC=-2.78, padj=0.00242358004041462 |  |
| 25730 | cellexp | id=ENSG00000162782, name=TDRD5, PrEC=8, str=36, LNCaP=1, str=0, DU145=144, str=70 |  |
| 25730 | tcgameth | site:cg09656934, B=0.57, L=0.72, H=0.69 |  |
| 25730 | tcgameth | site:cg11853788, B=0.51, L=0.76, H=0.74 |  |
| 25730 | tcgaexp | gene=TDRD5, entrez=163589, pos=chr1:179560748-179660407(+), B=80, L=65, M=69, H=60 |  |
| 25730 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |