DMR 25755 chr1:197889501-197889750 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:197889501-197889750 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | LHX9 (0bp away) |
| ANODEV p-value | 3.44307504975e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25755 | LHX9 | 2334 | uc001gui.1 | chr1 | 197881635 | 197899273 | + | 250 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 25755 | LHX9 | 2334 | uc001guk.1 | chr1 | 197886517 | 197899273 | + | 250 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25755 | chr1 | 197888741 | 197889935 | wgEncodeRegDnaseClusteredV2 | 48 | score:315, srow:91270 |
| 25755 | chr1 | 197884810 | 197889702 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:994, expCount:13, expNums:1,3,6,13,15,17,19,21,25,36,38,40,43, expScores:275,170,435,385,255,169,126,384,217,251,198,244,261, srow:332948 |
| 25755 | chr1 | 197888928 | 197889527 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:189, expCount:1, expNums:348, expScores:189, srow:332969 |
| 25755 | chr1 | 197889583 | 197889597 | tfbsConsSites | V$ISRE_01 | score:790, zScore:1.84, srow:404554 |
| 25755 | chr1 | 197889639 | 197889646 | phastConsElements100way | lod=31 | score:333, srow:697040 |
| 25755 | chr1 | 197889651 | 197889654 | phastConsElements100way | lod=18 | score:280, srow:697041 |
| 25755 | chr1 | 197887792 | 197890478 | cpgShore | — | values(x.gr)[overs$srow, ]:3716 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25755 | cellmeth_recounts | PrEC: 2, LNCaP: 3, DU145: 4 |  |
| 25755 | cellexp | id=ENSG00000143355, name=LHX9, PrEC=0, str=0, LNCaP=11, str=31, DU145=2, str=3 |  |
| 25755 | tcgameth | site:cg05920909, B=0.41, L=0.62, H=0.57 |  |
| 25755 | tcgaexp | gene=LHX9, entrez=56956, pos=chr1:197881635-197901715(+), B=3, L=1, M=5, H=6 |  |