DMR 25759 chr1:200003701-200005550 (1850bp)

DMR Stats
Positionchr1:200003701-200005550 (View on UCSC)
Width1850bp
Genomic Contextintron
Nearest GenesNR5A2 (0bp away)
ANODEV p-value4.73545281127e-06
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 4.0 (44.44 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25759 NR5A2 2342 uc001gvb.4 chr1 199996730 200146550 + 1850 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25759 NR5A2 2342 uc001gvc.4 chr1 199996730 200146550 + 1850 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
25759 NR5A2 2342 uc009wzg.2 chr1 199996730 200008923 + 1850 100.0 0.03 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25759 chr1 200003761 200004415 wgEncodeRegDnaseClusteredV2 60 score:1000, srow:92156
25759 chr1 200004586 200006015 wgEncodeRegDnaseClusteredV2 47 score:682, srow:92157
25759 chr1 200002586 200003765 wgEncodeRegTfbsClusteredV3 SUZ12 score:171, expCount:1, expNums:578, expScores:162, srow:336163
25759 chr1 200003827 200006096 wgEncodeRegTfbsClusteredV3 EZH2 score:617, expCount:9, expNums:3,6,15,19,21,36,38,40,43, expScores:142,310,239,141,326,239,264,371,307, srow:336165
25759 chr1 200004016 200004184 wgEncodeRegTfbsClusteredV3 EGR1 score:693, expCount:2, expNums:138,216, expScores:644,693, srow:336166
25759 chr1 200004446 200005115 wgEncodeRegTfbsClusteredV3 RBBP5 score:171, expCount:1, expNums:8, expScores:171, srow:336167
25759 chr1 200004790 200005599 wgEncodeRegTfbsClusteredV3 SUZ12 score:165, expCount:1, expNums:578, expScores:165, srow:336168
25759 chr1 200005202 200005801 wgEncodeRegTfbsClusteredV3 CTBP2 score:265, expCount:1, expNums:348, expScores:265, srow:336169
25759 chr1 200005284 200005899 wgEncodeRegTfbsClusteredV3 CHD1 score:449, expCount:1, expNums:4, expScores:449, srow:336170
25759 chr1 200005290 200005885 wgEncodeRegTfbsClusteredV3 ZNF263 score:286, expCount:1, expNums:368, expScores:286, srow:336171
25759 chr1 200005471 200005760 wgEncodeRegTfbsClusteredV3 ZNF143 score:181, expCount:1, expNums:361, expScores:181, srow:336172
25759 chr1 200005479 200005754 wgEncodeRegTfbsClusteredV3 EGR1 score:231, expCount:1, expNums:138, expScores:231, srow:336173
25759 chr1 200003709 200003720 tfbsConsSites V$PAX4_03 score:905, zScore:1.65, srow:409151
25759 chr1 200004707 200004725 tfbsConsSites V$AHRARNT_02 score:784, zScore:1.92, srow:409152
25759 chr1 200004708 200004715 tfbsConsSites V$MZF1_01 score:998, zScore:2.2, srow:409153
25759 chr1 200004709 200004722 tfbsConsSites V$P300_01 score:935, zScore:3.27, srow:409154
25759 chr1 200004725 200004742 tfbsConsSites V$AP4_01 score:815, zScore:1.73, srow:409155
25759 chr1 200004732 200004742 tfbsConsSites V$CP2_01 score:895, zScore:2, srow:409156
25759 chr1 200004738 200004747 tfbsConsSites V$AP4_Q6 score:951, zScore:1.86, srow:409157
25759 chr1 200004786 200004796 tfbsConsSites V$POU6F1_01 score:905, zScore:2.77, srow:409158
25759 chr1 200004804 200004817 tfbsConsSites V$GATA1_03 score:856, zScore:1.86, srow:409159
25759 chr1 200004829 200004842 tfbsConsSites V$NFKB_Q6 score:845, zScore:2.01, srow:409160
25759 chr1 200004836 200004859 tfbsConsSites V$STAT5A_02 score:747, zScore:1.72, srow:409161
25759 chr1 200004857 200004863 tfbsConsSites V$EN1_01 score:976, zScore:1.85, srow:409162
25759 chr1 200004858 200004881 tfbsConsSites V$COMP1_01 score:795, zScore:1.89, srow:409163
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  • 25 of 45 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25759 cellmeth_recounts PrEC: 5, LNCaP: 112, DU145: 51
25759 cellmeth_diffreps_PrECvsLNCaP A=6, B=60, Length=680, Event=Up, log2FC=3.32, padj=7.56190815198627e-11
25759 cellmeth_diffreps_LNCaPvsDU145 A=27.8, B=3.74, Length=240, Event=Down, log2FC=-2.89, padj=0.000816028517810598
25759 cellexp id=ENSG00000116833, name=NR5A2, PrEC=3, str=0, LNCaP=18, str=32, DU145=131, str=135
25759 tcgameth site:cg01941755, B=0.23, L=0.49, H=0.47
25759 tcgameth site:cg02779944, B=0.3, L=0.6, H=0.57
25759 tcgameth site:cg10513702, B=0.13, L=0.55, H=0.56
25759 tcgameth site:cg12730323, B=0.28, L=0.59, H=0.56
25759 tcgameth site:cg15062377, B=0.25, L=0.56, H=0.56
25759 tcgameth site:cg15130541, B=0.16, L=0.46, H=0.43
25759 tcgameth site:cg24553673, B=0.31, L=0.62, H=0.57
25759 tcgaexp gene=NR5A2, entrez=2494, pos=chr1:199996730-200146550(+), B=250, L=433, M=288, H=316