DMR 25778 chr1:202102301-202102550 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:202102301-202102550 (View on UCSC) |
| Width | 250bp |
| Genomic Context | 3' end |
| Nearest Genes | ARL8A (0bp away) |
| ANODEV p-value | 0.0141003624885 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25778 | ARL8A | 2378 | uc001gxk.2 | chr1 | 202102532 | 202113871 | - | 19 | 7.6 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (7.6) | 100.0 |
| 25778 | ARL8A | 2378 | uc031pro.1 | chr1 | 202102532 | 202113871 | - | 19 | 7.6 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (7.6) | 100.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25778 | chr1 | 202102106 | 202102450 | wgEncodeRegDnaseClusteredV2 | 15 | score:578, srow:93961 |
| 25778 | chr1 | 202102064 | 202102423 | wgEncodeRegTfbsClusteredV3 | CTCF | score:357, expCount:7, expNums:39,628,629,630,631,680,688, expScores:126,236,357,201,232,177,320, srow:343698 |
| 25778 | chr1 | 202102236 | 202102551 | wgEncodeRegTfbsClusteredV3 | MYC | score:1000, expCount:3, expNums:575,624,626, expScores:1000,439,225, srow:343699 |
| 25778 | chr1 | 202102241 | 202102516 | wgEncodeRegTfbsClusteredV3 | MAX | score:1000, expCount:1, expNums:576, expScores:1000, srow:343700 |
| 25778 | chr1 | 202102356 | 202102375 | tfbsConsSites | V$MYCMAX_03 | score:847, zScore:2.6, srow:415822 |
| 25778 | chr1 | 202102356 | 202102375 | tfbsConsSites | V$ARNT_02 | score:825, zScore:2.49, srow:415823 |
| 25778 | chr1 | 202102359 | 202102372 | tfbsConsSites | V$MAX_01 | score:828, zScore:1.68, srow:415824 |
| 25778 | chr1 | 202102360 | 202102371 | tfbsConsSites | V$NMYC_01 | score:898, zScore:2, srow:415825 |
| 25778 | chr1 | 202102529 | 202102543 | phastConsElements100way | lod=97 | score:446, srow:712882 |
| 25778 | chr1 | 202102546 | 202102647 | phastConsElements100way | lod=617 | score:629, srow:712883 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25778 | cellmeth_recounts | PrEC: 13, LNCaP: 14, DU145: 9 |  |
| 25778 | cellmeth_diffreps_PrECvsDU145 | A=17, B=1, Length=200, Event=Down, log2FC=-4.09, padj=0.00138789698671783 |  |
| 25778 | cellexp | id=ENSG00000143862, name=ARL8A, PrEC=2397, str=3848, LNCaP=2604, str=1952, DU145=1589, str=1595 |  |
| 25778 | cellexp | id=ENSG00000170075, name=GPR37L1, PrEC=2, str=9, LNCaP=4, str=9, DU145=9, str=9 |  |
| 25778 | tcgaexp | gene=ARL8A, entrez=127829, pos=chr1:202102532-202113871(-), B=2921, L=2952, M=2972, H=3248 |  |